Variant report

Variant	nsv1664
Chromosome Location	chr15:92191626-92236408
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr15:92235056-92235256	K562	blood:	n/a	n/a
2	ATF1	chr15:92211625-92211781	K562	blood:	n/a	n/a
3	CEBPB	chr15:92211438-92211727	HepG2	liver:	n/a	chr15:92211571-92211584 chr15:92211573-92211584 chr15:92211571-92211584 chr15:92211571-92211582
4	CEBPB	chr15:92211501-92211699	H1-hESC	embryonic stem cell:	n/a	chr15:92211571-92211584 chr15:92211573-92211584 chr15:92211571-92211584 chr15:92211571-92211582
5	CEBPB	chr15:92211424-92211692	A549	lung:	n/a	chr15:92211571-92211584 chr15:92211573-92211584 chr15:92211571-92211584 chr15:92211571-92211582
6	CEBPB	chr15:92211431-92211775	K562	blood:	n/a	chr15:92211571-92211584 chr15:92211573-92211584 chr15:92211571-92211584 chr15:92211571-92211582
7	CHD2	chr15:92203743-92203858	H1-hESC	embryonic stem cell:	n/a	n/a
8	CTCF	chr15:92203720-92203870	GM12864	blood:	n/a	chr15:92203778-92203796
9	CTCF	chr15:92222787-92222852	GM19240	blood:	n/a	chr15:92222817-92222830 chr15:92222814-92222832
10	CTCF	chr15:92203700-92203850	HRPEpiC	eye:	n/a	chr15:92203778-92203796
11	CTCF	chr15:92222840-92222990	HRPEpiC	eye:	n/a	n/a
12	CTCF	chr15:92222780-92222930	Hela-S3	cervix:	n/a	chr15:92222817-92222830 chr15:92222814-92222832
13	CTCF	chr15:92203581-92204003	MCF-7	breast:	n/a	chr15:92203778-92203796
14	CTCF	chr15:92222688-92222946	MCF-7	breast:	n/a	chr15:92222817-92222830 chr15:92222814-92222832
15	CTCF	chr15:92203700-92203850	BE2_C	brain:	n/a	chr15:92203778-92203796
16	CTCF	chr15:92206340-92206490	A549	lung:	n/a	n/a
17	CTCF	chr15:92222808-92222850	GM19238	blood:	n/a	chr15:92222817-92222830 chr15:92222814-92222832
18	CTCF	chr15:92203730-92203824	HepG2	liver:	n/a	chr15:92203778-92203796
19	CTCF	chr15:92203760-92203910	NB4	blood:	n/a	chr15:92203778-92203796
20	CTCF	chr15:92222692-92223099	MCF-7	breast:	n/a	chr15:92222817-92222830 chr15:92222814-92222832
21	CTCF	chr15:92203704-92203900	MCF-7	breast:	n/a	chr15:92203778-92203796
22	CTCF	chr15:92222709-92222927	MCF-7	breast:	n/a	chr15:92222817-92222830 chr15:92222814-92222832
23	CTCF	chr15:92222720-92222870	HEK293	kidney:	n/a	chr15:92222817-92222830 chr15:92222814-92222832
24	CTCF	chr15:92203728-92203902	MCF-7	breast:	n/a	chr15:92203778-92203796
25	CTCF	chr15:92203732-92203903	MCF-7	breast:	n/a	chr15:92203778-92203796
26	CTCF	chr15:92222719-92222910	MCF-7	breast:	n/a	chr15:92222817-92222830 chr15:92222814-92222832
27	CTCF	chr15:92203740-92203890	MCF-7	breast:	n/a	chr15:92203778-92203796
28	CTCF	chr15:92206360-92206510	Hela-S3	cervix:	n/a	n/a
29	CTCF	chr15:92203700-92203850	AG09319	gingival:	n/a	chr15:92203778-92203796
30	CTCF	chr15:92203750-92203840	Hela-S3	cervix:	n/a	chr15:92203778-92203796
31	CTCF	chr15:92203680-92203830	HEK293	kidney:	n/a	chr15:92203778-92203796
32	CTCF	chr15:92203740-92203890	SK-N-SH_RA	brain:	n/a	chr15:92203778-92203796
33	CTCF	chr15:92203760-92203910	HCT-116	colon:	n/a	chr15:92203778-92203796
34	CTCF	chr15:92203748-92203892	A549	lung:	n/a	chr15:92203778-92203796
35	CTCF	chr15:92203673-92203939	H1-hESC	embryonic stem cell:	n/a	chr15:92203778-92203796
36	CTCF	chr15:92222720-92222870	HMEC	breast:	n/a	chr15:92222817-92222830 chr15:92222814-92222832
37	CTCF	chr15:92203660-92203810	HepG2	liver:	n/a	chr15:92203778-92203796
38	CTCF	chr15:92203761-92203856	ProgFib	skin:	n/a	chr15:92203778-92203796
39	CTCF	chr15:92203580-92203730	A549	lung:	n/a	n/a
40	CTCF	chr15:92203780-92203930	HCT-116	colon:	n/a	n/a
41	CTCF	chr15:92203720-92203870	WERI-Rb-1	eye:	n/a	chr15:92203778-92203796
42	CTCF	chr15:92222580-92222993	MCF-7	breast:	n/a	chr15:92222817-92222830 chr15:92222814-92222832
43	CTCF	chr15:92203714-92203870	HepG2	liver:	n/a	chr15:92203778-92203796
44	CTCF	chr15:92222701-92222937	MCF-7	breast:	n/a	chr15:92222817-92222830 chr15:92222814-92222832
45	CTCF	chr15:92203765-92203839	GM19240	blood:	n/a	chr15:92203778-92203796
46	CTCF	chr15:92203640-92203790	HL-60	blood:	n/a	n/a
47	CTCF	chr15:92215569-92215630	Spleen_OC	spleen:	n/a	n/a
48	CTCF	chr15:92203785-92203801	K562	blood:	n/a	n/a
49	CTCF	chr15:92203640-92203790	MCF-7	breast:	n/a	n/a
50	CTCF	chr15:92203725-92203904	H1-hESC	embryonic stem cell:	n/a	chr15:92203778-92203796

No.	Distal block	Cell Line	Cell type
1	chr15:92220536..92222375-chr15:92223889..92225447,2	MCF-7	breast:
2	chr15:92207312..92210041-chr15:92211178..92212770,2	K562	blood:
3	chr15:92222380..92223278-chr15:92395614..92396568,3	MCF-7	breast:
4	chr15:92225806..92228238-chr15:92238147..92240052,2	MCF-7	breast:
5	chr15:92220536..92222375-chr15:92223889..92225447,2	MCF-7	breast:
6	chr15:92200292..92202872-chr15:92213502..92215602,2	MCF-7	breast:
7	chr14:35868344..35869870-chr15:92232637..92235340,2	MCF-7	breast:
8	chr15:92207312..92210041-chr15:92211178..92212770,2	K562	blood:
9	chr15:92200292..92202872-chr15:92213502..92215602,2	MCF-7	breast:
10	chr15:92223200..92223831-chr15:92396151..92396845,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLCO3A1-6	chr15:92207405-92207449	l_1223_chr15:92202432-92222672_testes
2	lnc-SLCO3A1-6	chr15:92227072-92227403	l_1223_chr15:92202432-92222672_testes
3	lnc-SLCO3A1-6	chr15:92209576-92209881	l_1223_chr15:92202432-92222672_testes
4	lnc-VPS33B-1	chr15:92192276-92192344	ENSG00000258765
5	lnc-SLCO3A1-6	chr15:92222267-92222672	l_1223_chr15:92202432-92222672_testes
6	lnc-SLCO3A1-6	chr15:92211633-92211819	l_1223_chr15:92202432-92222672_testes
7	lnc-SLCO3A1-5	chr15:92220001-92220290	NONHSAT048506
8	lnc-SLCO3A1-6	chr15:92213924-92214066	l_1223_chr15:92202432-92222672_testes
9	lnc-SLCO3A1-6	chr15:92202433-92202877	l_1223_chr15:92202432-92222672_testes

Variant related genes	Relation type
ENSG00000258765	TF binding region
ENSG00000258540	TF binding region

Extended variants
information (count: 1351 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:1351 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs202109866	chr15:92192291-92192292	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs143724564	chr15:92192294-92192295	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs138410410	chr15:92192303-92192304	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs556481706	chr15:92192306-92192307	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs143894788	chr15:92192407-92192408	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs541831930	chr15:92192410-92192411	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs555737218	chr15:92192426-92192427	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs538959313	chr15:92192433-92192434	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs541120463	chr15:92192449-92192450	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs543101995	chr15:92192465-92192466	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs377303624	chr15:92192469-92192470	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs73538489	chr15:92192482-92192483	Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs533331336	chr15:92192515-92192516	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs543621705	chr15:92192516-92192517	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs146372778	chr15:92192518-92192519	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs138982609	chr15:92192544-92192545	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs57078344	chr15:92192615-92192616	Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs369742198	chr15:92192644-92192645	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs182178928	chr15:92192669-92192670	Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs560786452	chr15:92192733-92192734	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs527329456	chr15:92192805-92192806	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs185966858	chr15:92192825-92192826	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs78297669	chr15:92192841-92192842	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs76496721	chr15:92192889-92192890	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs527947784	chr15:92192905-92192906	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs190694268	chr15:92192916-92192917	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs114645718	chr15:92192965-92192966	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs113639167	chr15:92192973-92192974	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs373513749	chr15:92192977-92192978	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs541057105	chr15:92193048-92193049	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs77512921	chr15:92193051-92193052	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs557792481	chr15:92193065-92193066	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs77321593	chr15:92193081-92193082	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs181027681	chr15:92193090-92193091	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs185461356	chr15:92193115-92193116	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs139117342	chr15:92193118-92193119	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs190119492	chr15:92193122-92193123	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs60634761	chr15:92193161-92193162	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs559822650	chr15:92193243-92193244	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs527261971	chr15:92193244-92193245	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs547433002	chr15:92193296-92193297	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs62011452	chr15:92193314-92193315	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs533064885	chr15:92193342-92193343	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs150794841	chr15:92193346-92193347	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs182747393	chr15:92193349-92193350	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs187435350	chr15:92193401-92193402	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs549239831	chr15:92193448-92193449	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs538423190	chr15:92193472-92193473	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs375597979	chr15:92193507-92193508	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs554475015	chr15:92193565-92193566	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Epilepsy	19486360	CNVD
Acute myeloid leukemia	17237825	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ovarian cancer	21720365	CNVD
Developmental delay	21147756	CNVD
Hepatocellular carcinoma	16750200	CNVD
Central neurocytomas	17123091	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	17989066	CNVD
Myelofibrosis	22110671	CNVD
Burkitt''s lymphoma	19759907	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92192400-92193800	Enhancers	Fetal Intestine Small	intestine
2	chr15:92192400-92194400	Enhancers	Fetal Intestine Large	intestine
3	chr15:92195600-92196400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr15:92196000-92196200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:92196200-92196400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:92196200-92196400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:92196200-92196600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr15:92196400-92199600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr15:92196600-92198200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr15:92197000-92197200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:92198200-92199000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr15:92198600-92199200	Enhancers	Dnd41	blood
13	chr15:92198600-92200000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:92198800-92199400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:92199000-92200200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:92199000-92203200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr15:92199200-92199400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
18	chr15:92199200-92199400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
19	chr15:92199200-92203000	Weak transcription	Dnd41	blood
20	chr15:92199800-92200000	Enhancers	Primary hematopoietic stem cells	blood
21	chr15:92199800-92200600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr15:92200000-92200400	Enhancers	Brain Substantia Nigra	brain
23	chr15:92200000-92202200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr15:92200200-92200600	Enhancers	Brain Hippocampus Middle	brain
25	chr15:92200400-92200800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr15:92200600-92201000	Enhancers	Brain Cingulate Gyrus	brain
27	chr15:92200600-92201000	Enhancers	Brain Substantia Nigra	brain
28	chr15:92202200-92203400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:92202400-92205400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr15:92202400-92205800	Enhancers	Primary hematopoietic stem cells	blood
31	chr15:92202800-92204000	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr15:92203000-92203800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr15:92203000-92204200	Enhancers	Fetal Thymus	thymus
34	chr15:92203000-92204600	Enhancers	Dnd41	blood
35	chr15:92203200-92204000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
36	chr15:92203200-92204600	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr15:92203400-92203800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
38	chr15:92203400-92203800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
39	chr15:92203400-92203800	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr15:92203400-92203800	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr15:92203400-92204000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr15:92203400-92204000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr15:92203400-92204200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
44	chr15:92203400-92204200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr15:92204200-92204600	Weak transcription	Fetal Thymus	thymus
46	chr15:92204200-92205200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:92204600-92204800	Enhancers	Fetal Thymus	thymus
48	chr15:92204600-92205400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr15:92204800-92208400	Weak transcription	Fetal Thymus	thymus
50	chr15:92205200-92208200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links