Variant report
Variant | nsv179949 |
---|---|
Chromosome Location | chr20:14529069-14529381 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs201060104 | chr20:14529083-14529084 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs199806394 | chr20:14529084-14529085 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs200846794 | chr20:14529085-14529086 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs201408841 | chr20:14529086-14529087 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs199514460 | chr20:14529087-14529088 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs11698750 | chr20:14529130-14529131 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs187187283 | chr20:14529140-14529141 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs545461482 | chr20:14529210-14529211 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs563665774 | chr20:14529220-14529221 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs371478318 | chr20:14529233-14529234 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs11698771 | chr20:14529243-14529244 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs11698797 | chr20:14529350-14529351 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs373767542 | chr20:14529378-14529379 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs376374101 | chr20:14529379-14529380 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs201735570 | chr20:14529381-14529382 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Breast cancer | 16397240 | CNVD |
abortions and stillbirths | 19751515 | CNVD |
Wilms tumour | 21544195 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Breast cancer | 16272173 | CNVD |
Melanoma | 18172304 | CNVD |
Cancer | 21637783 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Oral cancer | 19627613 | CNVD |
colon cancer | 17210682 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Cancer | 16751803 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Olfactory neuroblastoma | 18408657 | CNVD |
Central neurocytomas | 17123091 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Gastric cancer | 17908304 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Colorectal cancer | 21645411 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Lung cancer | 18438408 | CNVD |
Autism | 22495311 | CNVD |
Glaucoma | 21310917 | CNVD |
Alagille syndrome | 22470819 | CNVD |
Lung cancer | 16773561 | CNVD |
Renal cell carcinoma | 18765545 | CNVD |
Alagille syndrome | 17576883 | CNVD |
Anaplastic large cell lymphoma | 18179710 | CNVD |
Prostate cancer | 18632612 | CNVD |
Ewing''s sarcoma | 18628472 | CNVD |
Glioblastoma multiforme | 18628472 | CNVD |
Leukemia | 18628472 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Kabuki syndrome | 21720541 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
Neurocytoma | 17123091 | CNVD |
Glioblastoma multiforme | 21138945 | CNVD |
Cancer | 20164919 | CNVD |
Multiple sclerosis | 20663923 | CNVD |
Schizophrenia | 20663923 | CNVD |
brain infarct | 20663923 | CNVD |
Breast cancer | 22522925 | CNVD |
Breast cancer | 17142309 | CNVD |
Cancer | 20164920 | CNVD |
Breast cancer | 21364760 | CNVD |
Schizophrenia | 23813976 | CNVD |
Esophageal adenocarcinoma | 18519675 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:14523000-14529600 | Weak transcription | Gastric | stomach |