Variant report

Variant	nsv1867
Chromosome Location	chr16:72352262-72397339
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:12)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:72392062..72394300-chr16:72394460..72396793,2	MCF-7	breast:
2	chr16:72392062..72394300-chr16:72394460..72396793,2	MCF-7	breast:
3	chr16:72391765..72393568-chr16:72393614..72396584,2	K562	blood:
4	chr16:72391483..72394140-chr16:72422108..72424011,2	K562	blood:
5	chr16:72391765..72393568-chr16:72393614..72396584,2	K562	blood:
6	chr16:72392317..72394790-chr16:72403681..72405452,2	K562	blood:

(count:12 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DHX38-7	chr16:72357799-72358069	l_1359_chr16:72355558-72366490_testes
2	lnc-PMFBP1-3	chr16:72391412-72391517	NONHSAT143557
3	lnc-PMFBP1-3	chr16:72368022-72368507	NONHSAT143557
4	lnc-DHX38-7	chr16:72359645-72360002	l_1359_chr16:72355558-72366490_testes
5	lnc-PMFBP1-3	chr16:72371225-72371852	NONHSAT143557
6	lnc-DHX38-7	chr16:72355559-72355587	l_1359_chr16:72355558-72366490_testes
7	lnc-DHX38-7	chr16:72355906-72356108	l_1359_chr16:72355558-72366490_testes
8	lnc-PMFBP1-3	chr16:72391523-72392089	NONHSAT143557
9	lnc-DHX38-7	chr16:72362150-72362334	l_1359_chr16:72355558-72366490_testes
10	lnc-PMFBP1-3	chr16:72380224-72380971	NONHSAT143557
11	lnc-DHX38-7	chr16:72366366-72366774	l_1359_chr16:72355558-72366490_testes
12	lnc-PMFBP1-3	chr16:72355299-72355336	NONHSAT143557

No data

Extended variants
information (count: 1834 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:1834 , 50 per page) page: 1 2 3 4 5 6 7 ... 37

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs112165456	chr16:72352262-72352263	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs181786074	chr16:72352265-72352266	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs113236641	chr16:72352303-72352304	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs142458363	chr16:72352320-72352321	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs190667617	chr16:72352344-72352345	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs554387391	chr16:72352414-72352415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs374637016	chr16:72352426-72352427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs374830359	chr16:72352429-72352430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs534123870	chr16:72352455-72352456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs552287172	chr16:72352467-72352468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs62053970	chr16:72352479-72352480	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs182884988	chr16:72352493-72352494	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs535344697	chr16:72352508-72352509	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs537919626	chr16:72352527-72352528	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs368157105	chr16:72352538-72352539	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs556212562	chr16:72352541-72352542	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs542871353	chr16:72352544-72352545	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs538795081	chr16:72352549-72352550	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs186487412	chr16:72352566-72352567	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs535753061	chr16:72352576-72352577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs554105130	chr16:72352589-72352590	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs556589037	chr16:72352597-72352598	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs572244884	chr16:72352636-72352637	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs150210539	chr16:72352675-72352676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs191362654	chr16:72352716-72352717	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs576460094	chr16:72352722-72352723	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs577286426	chr16:72352749-72352750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs75108025	chr16:72352761-72352762	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs536104267	chr16:72352838-72352839	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs182636263	chr16:72352908-72352909	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs138896201	chr16:72352919-72352920	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs28404857	chr16:72352948-72352949	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs527916043	chr16:72352950-72352951	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs149391040	chr16:72352957-72352958	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs58097957	chr16:72352987-72352988	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs537555113	chr16:72353040-72353041	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs564976898	chr16:72353065-72353066	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs549855438	chr16:72353180-72353181	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs568109481	chr16:72353205-72353206	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs535433845	chr16:72353230-72353231	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs143761719	chr16:72353257-72353258	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs554701755	chr16:72353292-72353293	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs539690131	chr16:72353320-72353321	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs557682129	chr16:72353348-72353349	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs533053583	chr16:72353369-72353370	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs576143995	chr16:72353416-72353417	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs377267529	chr16:72353419-72353420	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs138498474	chr16:72353433-72353434	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs367618027	chr16:72353447-72353448	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs574529583	chr16:72353518-72353519	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17001317	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Prostate cancer	17245344	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute myeloid leukemia	16864856	CNVD
Infiltrating lobular breast cancer	19191266	CNVD
T-cell lymphomas	19863542	CNVD
Hepatocellular carcinoma	16750200	CNVD
Medulloblastoma	16783165	CNVD
Neuroblastoma	21899760	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	18628472	CNVD
Breast cancer	21806811	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21509527	CNVD
Melanoma	22183965	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:131 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72315600-72353600	Weak transcription	Dnd41	blood
2	chr16:72340000-72353000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr16:72343400-72353000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr16:72345400-72359400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr16:72345600-72353000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr16:72347000-72353600	Weak transcription	Pancreas	Pancrea
7	chr16:72347000-72355400	Weak transcription	Gastric	stomach
8	chr16:72349200-72352400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr16:72349400-72353600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr16:72350000-72352400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr16:72350400-72352400	Enhancers	Primary hematopoietic stem cells	blood
12	chr16:72351600-72352400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr16:72351800-72352400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr16:72351800-72353600	Weak transcription	Fetal Lung	lung
15	chr16:72352000-72353600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr16:72352400-72352800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr16:72352400-72353000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr16:72352800-72354400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr16:72352800-72355800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr16:72353000-72353200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr16:72353000-72354200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr16:72353000-72354200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
23	chr16:72353000-72355800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
24	chr16:72353600-72354000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr16:72353600-72354200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
26	chr16:72353600-72354200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr16:72353600-72354200	ZNF genes & repeats	Fetal Lung	lung
28	chr16:72353600-72354200	ZNF genes & repeats	Pancreas	Pancrea
29	chr16:72353600-72354200	ZNF genes & repeats	Thymus	Thymus
30	chr16:72353600-72354200	ZNF genes & repeats	Dnd41	blood
31	chr16:72353600-72354200	ZNF genes & repeats	HepG2	liver
32	chr16:72353800-72354200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
33	chr16:72354000-72354200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr16:72354200-72354400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr16:72354200-72354800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr16:72354200-72355000	Weak transcription	Dnd41	blood
37	chr16:72354200-72358200	Weak transcription	Thymus	Thymus
38	chr16:72354200-72366800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr16:72354200-72366800	Weak transcription	Pancreas	Pancrea
40	chr16:72354200-72368400	Weak transcription	HepG2	liver
41	chr16:72354200-72368600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr16:72355000-72355600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
43	chr16:72355000-72355600	ZNF genes & repeats	Dnd41	blood
44	chr16:72355600-72358200	Weak transcription	Primary hematopoietic stem cells	blood
45	chr16:72355600-72358200	Weak transcription	Dnd41	blood
46	chr16:72355600-72366800	Weak transcription	Primary B cells from cord blood	blood
47	chr16:72355800-72358200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr16:72355800-72358600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr16:72355800-72361400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr16:72356400-72357400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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