Variant report
Variant | nsv213755 |
---|---|
Chromosome Location | chr2:212735148-212737704 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs139838360 | chr2:212735164-212735165 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs145501365 | chr2:212735200-212735201 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs543844977 | chr2:212735208-212735209 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs376567766 | chr2:212735215-212735216 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs564745267 | chr2:212735220-212735221 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs185414681 | chr2:212735223-212735224 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs190227237 | chr2:212735240-212735241 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs548880412 | chr2:212735387-212735388 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs148863333 | chr2:212735402-212735403 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs530450820 | chr2:212735406-212735407 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs528279666 | chr2:212735466-212735467 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs181441955 | chr2:212735478-212735479 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs571368548 | chr2:212735487-212735488 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs143442063 | chr2:212735488-212735489 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs542601372 | chr2:212735583-212735584 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs370073207 | chr2:212735604-212735605 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs75214616 | chr2:212735623-212735624 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs556096206 | chr2:212735624-212735625 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs75618069 | chr2:212735635-212735636 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs369686244 | chr2:212735644-212735645 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs137861902 | chr2:212735658-212735659 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs142357966 | chr2:212735659-212735660 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs578068841 | chr2:212735678-212735679 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs543435610 | chr2:212735684-212735685 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs185931362 | chr2:212735784-212735785 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs559531667 | chr2:212735809-212735810 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs573972458 | chr2:212735837-212735838 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs190738246 | chr2:212735865-212735866 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs559263415 | chr2:212735894-212735895 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs144845262 | chr2:212735917-212735918 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs551191155 | chr2:212735918-212735919 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs373098610 | chr2:212735926-212735927 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs76453846 | chr2:212735964-212735965 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs184067467 | chr2:212736003-212736004 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs138776209 | chr2:212736026-212736027 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs141717444 | chr2:212736044-212736045 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs188957196 | chr2:212736053-212736054 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs370793116 | chr2:212736058-212736059 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs549686891 | chr2:212736060-212736061 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs566420134 | chr2:212736062-212736063 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs150783233 | chr2:212736107-212736108 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs572877525 | chr2:212736108-212736109 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs558362702 | chr2:212736115-212736116 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs529693358 | chr2:212736174-212736175 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs190990215 | chr2:212736179-212736180 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs537524692 | chr2:212736229-212736230 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs62184533 | chr2:212736231-212736232 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs547311934 | chr2:212736233-212736234 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs557184250 | chr2:212736247-212736248 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs376048553 | chr2:212736257-212736258 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Ependymoma | 16718352 | CNVD |
Melanoma | 18172304 | CNVD |
Cancer | 16751803 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Acute lymphoblastic leukemia | 21980252 | CNVD |
Breast cancer | 17603634 | CNVD |
Testicular germ cell tumor | 18059402 | CNVD |
Breast cancer | 16272173 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Cancer | 21637783 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Liposarcoma | 21253554 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Embryonal rhabdomyosarcoma | 16790082 | CNVD |
Autism | 16446308 | CNVD |
Autism | 19401682 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Lung cancer | 18438408 | CNVD |
Prostate cancer | 18632612 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Biliary cancer | 20360734 | CNVD |
Breast cancer | 20360734 | CNVD |
Coronary artery disease | 20360734 | CNVD |
Crohn''s disease | 20360734 | CNVD |
Hypertension | 20360734 | CNVD |
Rheumatoid arthritis | 20360734 | CNVD |
Type 1 diabetes | 20360734 | CNVD |
Type 2 diabetes | 20360734 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Cervical cancer | 21062161 | CNVD |
Adenoid cystic carcinoma | 18698036 | CNVD |
Non-muscle invasive bladder neoplasm | 19445696 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Autism | 20808228 | CNVD |
Renal cell carcinoma | 18765545 | CNVD |
Ovarian cancer | 19193619 | CNVD |
Non-small cell lung cancer | 18676828 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Myofibroblastic sarcoma | 19369631 | CNVD |
Chordoma | 18071362 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Schizophrenia | 18923514 | CNVD |
Schizophrenia | 22241247 | CNVD |
Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
Urothelial cell carcinoma | 18451213 | CNVD |
Developmental delay | 21147756 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Schizophrenia | 20838587 | CNVD |
Breast cancer | 17661082 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Breast cancer | 22522925 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Schizophrenia | 18990708 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:212734200-212741800 | Weak transcription | HUVEC | blood vessel |