Variant report
| Variant | nsv214938 |
|---|---|
| Chromosome Location | chr2:114868062-114868115 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs554400939 | chr2:114868062-114868063 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs376588184 | chr2:114868063-114868064 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs567268689 | chr2:114868066-114868067 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs566982844 | chr2:114868067-114868068 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs569751748 | chr2:114868068-114868069 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs142481447 | chr2:114868075-114868076 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs151139406 | chr2:114868076-114868077 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs549810294 | chr2:114868077-114868078 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs71420249 | chr2:114868090-114868091 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs71394103 | chr2:114868102-114868103 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs569917238 | chr2:114868103-114868104 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs182713549 | chr2:114868104-114868105 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs71937153 | chr2:114868105-114868106 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs185891454 | chr2:114868106-114868107 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:50)
| Disease | PMID | Source |
|---|---|---|
| Medulloblastoma | 21979893 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Ependymoma | 16718352 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Cancer | 20164919 | CNVD |
| Autism | 22495311 | CNVD |
| Autism | 18522746 | CNVD |
| Neurodevelopmental disorder | 22521361 | CNVD |
| Melanoma | 18172304 | CNVD |
| Cancer | 16751803 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Acute lymphoblastic leukemia | 21980252 | CNVD |
| Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
| Seminomas | 18059402 | CNVD |
| Testicular germ cell tumor | 18059402 | CNVD |
| Myxofibrosarcoma | 16751306 | CNVD |
| Breast cancer | 16272173 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Mowat-Wilson syndrome | 21572526 | CNVD |
| Disorders of sex development | 21048976 | CNVD |
| epilepsy | 18472482 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Cancer | 21637783 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Embryonal rhabdomyosarcoma | 16790082 | CNVD |
| Autism | 16446308 | CNVD |
| Autism | 19401682 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Splenic marginal zone lymphoma | 21957467 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| myoclonus epilepsy | 18472482 | CNVD |
| Benign familial neonatal-infantile seizures | 18472482 | CNVD |
| Diffuse large b-cell lymphoma | 18287131 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Neuroticism | 17667963 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:114867400-114870800 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
| 2 | chr2:114867600-114870600 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
