Variant report

Variant	nsv24247
Chromosome Location	chr10:42385733-42387287
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:42387171..42387692-chr16:33888891..33889406,2	MCF-7	breast:
2	chr10:42385048..42385927-chr20:45917973..45918793,2	MCF-7	breast:
3	chr10:42385424..42387506-chr16:88876940..88878642,2	MCF-7	breast:
4	chr10:42385202..42385933-chr7:149119111..149120081,2	MCF-7	breast:
5	chr10:42387191..42387693-chr16:34189725..34190226,2	MCF-7	breast:
6	chr10:42385049..42385862-chr2:89835873..89836374,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMS1-12	chr10:42387203-42387475	NONHSAT012847

No data

Variant related genes	Relation type
ENSG00000198931	chromatin interactions
ENSG00000261842	chromatin interactions

Extended variants
information (count: 504 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:504 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs149643832	chr10:42385733-42385734	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs200535835	chr10:42385734-42385735	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs558962596	chr10:42385740-42385741	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs61847700	chr10:42385742-42385743	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs61847701	chr10:42385743-42385744	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs57977185	chr10:42385746-42385747	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs60417331	chr10:42385748-42385749	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs143743384	chr10:42385749-42385750	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs541499019	chr10:42385753-42385754	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs11819026	chr10:42385754-42385755	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs28869524	chr10:42385755-42385756	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs574569485	chr10:42385757-42385758	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs200780125	chr10:42385761-42385762	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs60339086	chr10:42385762-42385763	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs370465994	chr10:42385764-42385765	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs55690698	chr10:42385765-42385766	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs563606608	chr10:42385769-42385770	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs532247530	chr10:42385770-42385771	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs55642691	chr10:42385775-42385776	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs56181307	chr10:42385779-42385780	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs58110038	chr10:42385780-42385781	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs60133287	chr10:42385781-42385782	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs545413566	chr10:42385785-42385786	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs61602016	chr10:42385787-42385788	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs558909996	chr10:42385790-42385791	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs58940294	chr10:42385793-42385794	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs548265035	chr10:42385803-42385804	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs78650213	chr10:42385807-42385808	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs2173466	chr10:42385809-42385810	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs530326185	chr10:42385812-42385813	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs550060961	chr10:42385814-42385815	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs61847705	chr10:42385815-42385816	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs28881894	chr10:42385817-42385818	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs570383669	chr10:42385818-42385819	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs539304565	chr10:42385821-42385822	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs71221918	chr10:42385822-42385823	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs56794205	chr10:42385827-42385828	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs76053314	chr10:42385830-42385831	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs9794026	chr10:42385833-42385834	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs74709642	chr10:42385834-42385835	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs28791826	chr10:42385835-42385836	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs71227194	chr10:42385836-42385837	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs28842920	chr10:42385843-42385844	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs59027871	chr10:42385848-42385849	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs534849082	chr10:42385849-42385850	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs555035410	chr10:42385853-42385854	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs9665020	chr10:42385859-42385860	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs9663122	chr10:42385862-42385863	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs9702070	chr10:42385865-42385866	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs28847877	chr10:42385866-42385867	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD

Chromatin state (count:144 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42373600-42385800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:42373600-42385800	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
3	chr10:42373600-42385800	ZNF genes & repeats	Pancreas	Pancrea
4	chr10:42373600-42385800	ZNF genes & repeats	K562	blood
5	chr10:42373600-42386000	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
6	chr10:42373600-42386000	ZNF genes & repeats	Aorta	Aorta
7	chr10:42373600-42387800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
8	chr10:42373600-42388200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
9	chr10:42373600-42388200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
10	chr10:42373600-42388200	ZNF genes & repeats	Placenta	Placenta
11	chr10:42373600-42388200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
12	chr10:42373600-42388400	ZNF genes & repeats	Spleen	Spleen
13	chr10:42373600-42388600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
14	chr10:42373600-42389400	ZNF genes & repeats	Stomach Mucosa	stomach
15	chr10:42373600-42397200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
16	chr10:42373600-42397200	ZNF genes & repeats	GM12878-XiMat	blood
17	chr10:42373600-42397200	ZNF genes & repeats	HUVEC	blood vessel
18	chr10:42373600-42397400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
19	chr10:42373600-42399600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:42373600-42399600	ZNF genes & repeats	Fetal Kidney	kidney
21	chr10:42373600-42400800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
22	chr10:42373600-42400800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:42373600-42400800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:42373600-42400800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:42373600-42400800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
27	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
28	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
29	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
30	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
31	chr10:42373600-42400800	ZNF genes & repeats	Adipose Nuclei	Adipose
32	chr10:42373600-42400800	ZNF genes & repeats	Brain Angular Gyrus	brain
33	chr10:42373600-42400800	ZNF genes & repeats	Brain Anterior Caudate	brain
34	chr10:42373600-42400800	ZNF genes & repeats	Brain Hippocampus Middle	brain
35	chr10:42373600-42400800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
36	chr10:42373600-42400800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:42373600-42400800	ZNF genes & repeats	Brain Substantia Nigra	brain
38	chr10:42373600-42400800	ZNF genes & repeats	Colon Smooth Muscle	Colon
39	chr10:42373600-42400800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
40	chr10:42373600-42400800	ZNF genes & repeats	Fetal Heart	heart
41	chr10:42373600-42400800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
42	chr10:42373600-42400800	ZNF genes & repeats	Fetal Lung	lung
43	chr10:42373600-42400800	ZNF genes & repeats	Gastric	stomach
44	chr10:42373600-42400800	ZNF genes & repeats	Left Ventricle	heart
45	chr10:42373600-42400800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
46	chr10:42373600-42400800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
47	chr10:42373600-42400800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
48	chr10:42373600-42400800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
49	chr10:42373600-42400800	ZNF genes & repeats	Dnd41	blood
50	chr10:42373600-42400800	ZNF genes & repeats	HMEC	breast

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