Variant report
| Variant | nsv24958 |
|---|---|
| Chromosome Location | chr10:21522686-21522802 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs11012597 | chr10:21522686-21522687 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs529307432 | chr10:21522687-21522688 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs11012598 | chr10:21522688-21522689 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 4 | rs566137457 | chr10:21522701-21522702 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs181467092 | chr10:21522717-21522718 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs11012599 | chr10:21522735-21522736 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs11012600 | chr10:21522736-21522737 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs548862410 | chr10:21522746-21522747 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs146784177 | chr10:21522756-21522757 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs10828223 | chr10:21522785-21522786 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs374895486 | chr10:21522798-21522799 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:35)
| Disease | PMID | Source |
|---|---|---|
| Breast cancer | 17133270 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Phyllodes tumor | 17334353 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Intracranial aneurysm | 16715129 | CNVD |
| Multiple myeloma | 16616336 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Olfactory neuroblastoma | 18408657 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Glioblastoma multiforme | 21525872 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:21521400-21525400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr10:21521800-21523200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 3 | chr10:21522000-21549600 | Weak transcription | H1 Cell Line | embryonic stem cell |
| 4 | chr10:21522200-21549200 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
