Variant report

Variant	nsv24973
Chromosome Location	chr10:90334911-90335052
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89623284..89624802-chr10:90333156..90335627,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171862	chromatin interactions

Extended variants
information (count: 22 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs373883273	chr10:90334911-90334912	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs67949156	chr10:90334912-90334913	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs367776961	chr10:90334913-90334914	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs375572767	chr10:90334917-90334918	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs7906052	chr10:90334918-90334919	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs201891717	chr10:90334938-90334939	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs377248573	chr10:90334954-90334955	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs368178662	chr10:90334960-90334961	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs369672109	chr10:90334961-90334962	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs11595396	chr10:90334963-90334964	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs10887833	chr10:90334965-90334966	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs111766573	chr10:90334971-90334972	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs368630535	chr10:90334972-90334973	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs10887834	chr10:90334973-90334974	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs10887835	chr10:90334975-90334976	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs28631536	chr10:90334990-90334991	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs28401683	chr10:90334994-90334995	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs572104128	chr10:90335021-90335022	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs113818151	chr10:90335023-90335024	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs534423514	chr10:90335039-90335040	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs369328719	chr10:90335040-90335041	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs189888859	chr10:90335041-90335042	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164920	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Melanoma	17363583	CNVD
Prostate cancer	21147910	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Ependymoma	20639864	CNVD

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90312200-90342400	Weak transcription	Ovary	ovary
2	chr10:90315400-90342400	Weak transcription	Aorta	Aorta
3	chr10:90317800-90341800	Weak transcription	Adipose Nuclei	Adipose
4	chr10:90319200-90342000	Weak transcription	Pancreas	Pancrea
5	chr10:90321000-90342000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:90326800-90342400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:90331000-90341800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:90331000-90342400	Weak transcription	Psoas Muscle	Psoas
9	chr10:90331400-90342400	Weak transcription	Left Ventricle	heart
10	chr10:90331600-90342400	Weak transcription	Esophagus	oesophagus
11	chr10:90331800-90342000	Weak transcription	Gastric	stomach

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