Variant report

Variant	nsv25010
Chromosome Location	chr10:110875944-110884926
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 288 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:288 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs188395031	chr10:110875982-110875983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs7092187	chr10:110875983-110875984	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs565992548	chr10:110875991-110875992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs557478017	chr10:110875995-110875996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs367578180	chr10:110876000-110876001	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs180946172	chr10:110876008-110876009	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs539324273	chr10:110876044-110876045	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs143047486	chr10:110876062-110876063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs545738929	chr10:110876088-110876089	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs34588444	chr10:110876107-110876108	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs563099801	chr10:110876124-110876125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs531783345	chr10:110876142-110876143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs34810710	chr10:110876186-110876187	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs542556011	chr10:110876202-110876203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs562350047	chr10:110876213-110876214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs541821890	chr10:110876265-110876266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs527713007	chr10:110876273-110876274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs547808104	chr10:110876284-110876285	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs570894955	chr10:110876361-110876362	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs185547669	chr10:110876418-110876419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs148196892	chr10:110876425-110876426	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs563720396	chr10:110876449-110876450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs569851250	chr10:110876456-110876457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs112631859	chr10:110876463-110876464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs117245045	chr10:110876487-110876488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs573085647	chr10:110876503-110876504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs534358580	chr10:110876519-110876520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs557342451	chr10:110876526-110876527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs11194403	chr10:110876539-110876540	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
30	rs190429967	chr10:110876565-110876566	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs117329752	chr10:110876604-110876605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs11194404	chr10:110876638-110876639	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs373232261	chr10:110876645-110876646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs111416519	chr10:110876646-110876647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs562412759	chr10:110876659-110876660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs572764768	chr10:110876710-110876711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs186968519	chr10:110876717-110876718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs34871347	chr10:110876769-110876770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs147384867	chr10:110876775-110876776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs76740829	chr10:110876776-110876777	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs533143038	chr10:110876798-110876799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs190079139	chr10:110876800-110876801	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs188510114	chr10:110877431-110877432	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs568844876	chr10:110877432-110877433	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs4635016	chr10:110877446-110877447	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs550295973	chr10:110877453-110877454	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs112496810	chr10:110877468-110877469	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs536376644	chr10:110877471-110877472	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs553071068	chr10:110877542-110877543	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs549191497	chr10:110877543-110877544	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
renal hypoplasia	20603712	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Myxofibrosarcoma	16751306	CNVD
Cornelia de Lange syndrome	24599119	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	16397240	CNVD
Urothelial carcinoma	21177765	CNVD
Multiple myeloma	16616336	CNVD
Chronic lymphocytic leukemia	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	21509527	CNVD
Breast cancer	21364760	CNVD
Barrett''s syndrome	19417022	CNVD
Sezary syndrome	18413736	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:110872600-110876800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:110877400-110877800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
3	chr10:110877600-110877800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:110877800-110880200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:110882400-110882600	Enhancers	Adipose Nuclei	Adipose
6	chr10:110882600-110885600	Weak transcription	Adipose Nuclei	Adipose

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