Variant report

Variant	nsv25166
Chromosome Location	chr10:98389483-98389666
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98377424..98379639-chr10:98388440..98390025,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000202047	chromatin interactions
ENSG00000155629	chromatin interactions

Extended variants
information (count: 12 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs33921990	chr10:98389490-98389491	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs78946494	chr10:98389498-98389499	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs72818980	chr10:98389516-98389517	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs191197991	chr10:98389518-98389519	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs547203530	chr10:98389563-98389564	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs114117701	chr10:98389564-98389565	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs72818982	chr10:98389624-98389625	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs117035572	chr10:98389625-98389626	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs569567497	chr10:98389629-98389630	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs536991814	chr10:98389630-98389631	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs555722755	chr10:98389663-98389664	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs374575688	chr10:98389665-98389666	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16608533	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16912164	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Autosomal dominant partial epilepsy	18472482	CNVD
Breast cancer	16397240	CNVD
Myxofibrosarcoma	16751306	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98350800-98395600	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr10:98352400-98399400	Strong transcription	Primary B cells from peripheral blood	blood
3	chr10:98352600-98403000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr10:98353000-98403000	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr10:98360400-98392800	Weak transcription	Thymus	Thymus
6	chr10:98363800-98392600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr10:98366600-98392600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:98367400-98418600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:98374400-98390200	Weak transcription	Small Intestine	intestine
10	chr10:98375800-98390200	Weak transcription	Adipose Nuclei	Adipose
11	chr10:98377400-98392600	Weak transcription	Esophagus	oesophagus
12	chr10:98378200-98392600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr10:98378800-98392400	Weak transcription	Fetal Intestine Large	intestine
14	chr10:98378800-98392600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:98379000-98396200	Weak transcription	HepG2	liver
16	chr10:98379600-98392600	Strong transcription	Liver	Liver
17	chr10:98379800-98392200	Weak transcription	Fetal Intestine Small	intestine
18	chr10:98380000-98392600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr10:98380200-98392400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr10:98380400-98392600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr10:98380400-98392600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr10:98381600-98408200	Weak transcription	Lung	lung
23	chr10:98381800-98393000	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr10:98385000-98392200	Weak transcription	Stomach Mucosa	stomach
25	chr10:98385200-98400800	Weak transcription	Pancreas	Pancrea
26	chr10:98386200-98391400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr10:98386400-98392800	Weak transcription	Fetal Thymus	thymus
28	chr10:98386800-98391200	Weak transcription	Placenta	Placenta
29	chr10:98386800-98391800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr10:98387000-98392200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:98387000-98410200	Weak transcription	Gastric	stomach
32	chr10:98388400-98393600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:98388400-98393800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:98388600-98390000	Weak transcription	GM12878-XiMat	blood
35	chr10:98388600-98390400	Weak transcription	Spleen	Spleen
36	chr10:98388600-98390600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr10:98388600-98393800	Weak transcription	Primary hematopoietic stem cells	blood
38	chr10:98389000-98390600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:98389200-98390800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr10:98389200-98391600	Weak transcription	Primary B cells from cord blood	blood

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