Variant report

Variant	nsv25268
Chromosome Location	chr10:578662-578733
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:577006..578982-chr10:591616..594323,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 54 )

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs375681652	chr10:578674-578675	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs816638	chr10:578680-578681	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs75061527	chr10:578686-578687	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs200996246	chr10:578696-578697	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs113469334	chr10:578698-578699	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs147435795	chr10:578699-578700	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs543360502	chr10:578703-578704	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs79435226	chr10:578704-578705	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs140788478	chr10:578716-578717	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:54)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21858162	CNVD
Obesity	19966786	CNVD

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:557800-582200	Weak transcription	Osteobl	bone
2	chr10:566000-581200	Weak transcription	Adipose Nuclei	Adipose
3	chr10:568600-582000	Weak transcription	Right Atrium	heart
4	chr10:568600-582400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:571400-580400	Enhancers	Ovary	ovary
6	chr10:572000-582000	Weak transcription	NH-A	brain
7	chr10:572200-579200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:572200-581800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:573200-579000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:573200-587200	Weak transcription	Gastric	stomach
11	chr10:573200-587800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:573800-582600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr10:575000-578800	Weak transcription	Fetal Stomach	stomach
14	chr10:575000-580000	Weak transcription	Fetal Brain Male	brain
15	chr10:575000-582000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr10:575800-580200	Weak transcription	Fetal Brain Female	brain
17	chr10:576400-579000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr10:576400-579200	Weak transcription	Brain Anterior Caudate	brain
19	chr10:576600-581800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr10:577000-579600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:577000-582000	Weak transcription	Brain Substantia Nigra	brain
22	chr10:577000-582000	Weak transcription	Psoas Muscle	Psoas
23	chr10:577000-582800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr10:577200-579200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:577200-581000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:577600-579000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr10:577600-579200	Weak transcription	Spleen	Spleen
28	chr10:577600-579800	Enhancers	Pancreas	Pancrea
29	chr10:577800-579200	Weak transcription	Left Ventricle	heart
30	chr10:577800-580600	Strong transcription	Fetal Intestine Small	intestine
31	chr10:578000-580000	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr10:578200-578800	Enhancers	Right Ventricle	heart
33	chr10:578400-578800	Weak transcription	Colon Smooth Muscle	Colon
34	chr10:578400-579600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr10:578400-579800	Enhancers	Brain Angular Gyrus	brain
36	chr10:578400-580000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:578400-582200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:578400-587800	Weak transcription	Fetal Muscle Leg	muscle
39	chr10:578600-579000	Weak transcription	Brain Hippocampus Middle	brain
40	chr10:578600-579000	Weak transcription	Fetal Muscle Trunk	muscle

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