Variant report
| Variant | nsv25401 |
|---|---|
| Chromosome Location | chr10:25638287-25638833 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:25606928..25608702-chr10:25636326..25639003,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs142539364 | chr10:25638296-25638297 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs112606107 | chr10:25638315-25638316 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs150963363 | chr10:25638360-25638361 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs551298219 | chr10:25638369-25638370 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs546250373 | chr10:25638425-25638426 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs1773652 | chr10:25638426-25638427 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 7 | rs12261120 | chr10:25638433-25638434 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 8 | rs533822230 | chr10:25638439-25638440 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs551156772 | chr10:25638449-25638450 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs369528441 | chr10:25638510-25638511 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs564051216 | chr10:25638530-25638531 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs547702711 | chr10:25638543-25638544 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs548543670 | chr10:25638649-25638650 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs149676143 | chr10:25638684-25638685 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs77293307 | chr10:25638714-25638715 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:44)
| Disease | PMID | Source |
|---|---|---|
| Breast cancer | 17133270 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Phyllodes tumor | 17334353 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Behavioral abnormalities | 21522184 | CNVD |
| Dysmorphic features | 21522184 | CNVD |
| low-grade B-cell lymphoma tumor | 18367492 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Autism | 21439084 | CNVD |
| Maculopathy | 20981449 | CNVD |
| Ovine squamous-cell carcinoma | 17599052 | CNVD |
| T-cell acute lymphoblastic leukemia | 18185524 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Pancreatic cancer | 17952125 | CNVD |
| Breast cancer | 22522925 | CNVD |
| Glioblastoma multiforme | 21525872 | CNVD |
| Cancer | 20164919 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:25632400-25642600 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
