Variant report

Variant	nsv25405
Chromosome Location	chr10:97683026-97686572
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:116 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs531759940	chr10:97683049-97683050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs145979899	chr10:97683074-97683075	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs139847910	chr10:97683080-97683081	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs527700615	chr10:97683094-97683095	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs377415212	chr10:97683195-97683196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs547349031	chr10:97683231-97683232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs540674706	chr10:97683345-97683346	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs561197529	chr10:97683386-97683387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs551551848	chr10:97683388-97683389	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs529902195	chr10:97683466-97683467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs75466035	chr10:97683481-97683482	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs190046182	chr10:97683482-97683483	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs142979615	chr10:97683498-97683499	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs552262242	chr10:97683499-97683500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs565509255	chr10:97683500-97683501	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs534641440	chr10:97683637-97683638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs554026880	chr10:97683650-97683651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs560305484	chr10:97683658-97683659	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs10786246	chr10:97683666-97683667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs536446235	chr10:97683669-97683670	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs558952700	chr10:97683703-97683704	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs556293387	chr10:97683705-97683706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs530846027	chr10:97683778-97683779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs576588759	chr10:97683787-97683788	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs373506494	chr10:97683792-97683793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs545778408	chr10:97683846-97683847	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs565403095	chr10:97683869-97683870	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs74503287	chr10:97683907-97683908	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs11188521	chr10:97683914-97683915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs182817770	chr10:97683946-97683947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs200081023	chr10:97683995-97683996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs561158812	chr10:97684007-97684008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs372995847	chr10:97684013-97684014	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs374333694	chr10:97684036-97684037	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs529967318	chr10:97684054-97684055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs371415513	chr10:97684146-97684147	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs34963139	chr10:97684234-97684235	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs149863190	chr10:97684250-97684251	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs370059779	chr10:97684275-97684276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs377424609	chr10:97684276-97684277	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs528564666	chr10:97684284-97684285	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs374651469	chr10:97684286-97684287	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs375219897	chr10:97684296-97684297	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs77791639	chr10:97684297-97684298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs367841282	chr10:97684320-97684321	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs547826901	chr10:97684328-97684329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs570544817	chr10:97684344-97684345	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs567723353	chr10:97684356-97684357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs370419569	chr10:97684359-97684360	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs117086544	chr10:97684452-97684453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Prostate cancer	16573809	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16912164	CNVD
Melanoma	17363583	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97668200-97693600	Weak transcription	Fetal Stomach	stomach
2	chr10:97675600-97693400	Weak transcription	Aorta	Aorta
3	chr10:97680800-97686800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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