Variant report

Variant	nsv2557
Chromosome Location	chr19:56532303-56548007
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:56532441..56535023-chr19:56626628..56629336,2	K562	blood:
2	chr19:56538480..56540946-chr19:56548359..56549987,2	K562	blood:
3	chr19:56537372..56539980-chr19:56548359..56550687,2	K562	blood:
4	chr19:56538350..56540357-chr19:56542809..56545691,2	K562	blood:
5	chr19:56538350..56540357-chr19:56542809..56545691,2	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF787-1	chr19:56533954-56534208	ucscGeneNc_uc002pwe_1
2	lnc-ZNF787-1	chr19:56535081-56535219	ucscGeneNc_uc002pwe_1
3	lnc-ZNF787-1	chr19:56532996-56533274	ucscGeneNc_uc002pwe_1
4	lnc-ZNF787-1	chr19:56532304-56532600	ucscGeneNc_uc002pwe_1

No data

Extended variants
information (count: 274 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:274 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7256891	chr19:56532309-56532310	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs575192830	chr19:56532331-56532332	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs544091912	chr19:56532347-56532348	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs560809169	chr19:56532362-56532363	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs529698625	chr19:56532364-56532365	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs546715942	chr19:56532384-56532385	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs539821858	chr19:56532391-56532392	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs199726671	chr19:56532399-56532400	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs145095064	chr19:56532409-56532410	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs185076040	chr19:56532411-56532412	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs569468199	chr19:56532417-56532418	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs112337011	chr19:56532427-56532428	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs532082251	chr19:56532457-56532458	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs548908874	chr19:56532461-56532462	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs190859098	chr19:56532471-56532472	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs371379277	chr19:56532483-56532484	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs147208998	chr19:56532484-56532485	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs149665408	chr19:56532522-56532523	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs577838410	chr19:56532531-56532532	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs117087461	chr19:56532577-56532578	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs532192713	chr19:56532578-56532579	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs306445	chr19:56532583-56532584	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
23	rs575106843	chr19:56532600-56532601	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs144538861	chr19:56533004-56533005	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs573305481	chr19:56533008-56533009	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs554501059	chr19:56533020-56533021	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs62120425	chr19:56533039-56533040	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs35528526	chr19:56533049-56533050	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs537668450	chr19:56533050-56533051	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs146599279	chr19:56533057-56533058	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs574706731	chr19:56533076-56533077	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs555605977	chr19:56533080-56533081	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs55812774	chr19:56533125-56533126	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs576769434	chr19:56533185-56533186	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs191287499	chr19:56533204-56533205	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs562592228	chr19:56533206-56533207	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs370428566	chr19:56533209-56533210	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs140546582	chr19:56533239-56533240	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs372460032	chr19:56533240-56533241	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs542475025	chr19:56533241-56533242	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs542502516	chr19:56533958-56533959	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs184363392	chr19:56533969-56533970	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs78707966	chr19:56533987-56533988	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs139660674	chr19:56534028-56534029	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs188746531	chr19:56534057-56534058	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs150398066	chr19:56534059-56534060	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs574464653	chr19:56534089-56534090	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs79322114	chr19:56534106-56534107	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs535667137	chr19:56534115-56534116	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs550103754	chr19:56534141-56534142	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Colorectal cancer	16272173	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Breast cancer	21785460	CNVD
Myelofibrosis	22110671	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Alzheimer''s disease	22166940	CNVD
Heart disease	21282601	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Glioblastoma multiforme	21922591	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Breast cancer	20409316	CNVD
early-passage human iPS cells	21368824	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56538000-56540200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr19:56538200-56538800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:56538400-56538600	Bivalent/Poised TSS	Hela-S3	cervix
4	chr19:56538600-56539200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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