Variant report

Variant	nsv278791
Chromosome Location	chr4:122164616-122164617
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 73 )

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs36042108	chr4:122164616-122164617	Enhancers Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:73)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Myelodysplastic syndrome	21251322	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
Colorectal cancer	20459617	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Esophageal cancer	21851588	CNVD
Colorectal cancer	16272173	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Neuroblastoma	21899760	CNVD
Renal cell carcinoma	18194544	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Myelofibrosis	22110671	CNVD
small cell lung cancer	20016488	CNVD
Clear cell renal cell carcinoma	18791270	CNVD
Acute myeloid leukemia	19651601	CNVD
Gastric cancer	16891809	CNVD
Olfactory neuroblastoma	18408657	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:122164200-122165600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
2	chr4:122164400-122165000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:122164400-122165000	Active TSS	NHDF-Ad	bronchial
4	chr4:122164400-122165200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
5	chr4:122164400-122165200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
6	chr4:122164400-122165200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
7	chr4:122164400-122165200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
8	chr4:122164600-122164800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:122164600-122164800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
10	chr4:122164600-122164800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:122164600-122164800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
12	chr4:122164600-122164800	Flanking Active TSS	GM12878-XiMat	blood
13	chr4:122164600-122165000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:122164600-122165000	Active TSS	Primary T cells fromperipheralblood	blood
15	chr4:122164600-122165000	Active TSS	Primary T helper naive cells from peripheral blood	blood
16	chr4:122164600-122165000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
17	chr4:122164600-122165000	Active TSS	Duodenum Mucosa	Duodenum
18	chr4:122164600-122165000	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr4:122164600-122165000	Flanking Active TSS	Fetal Lung	lung
20	chr4:122164600-122165000	Active TSS	Ovary	ovary
21	chr4:122164600-122165200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:122164600-122165200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
23	chr4:122164600-122165200	Active TSS	Primary T helper cells fromperipheralblood	blood
24	chr4:122164600-122165200	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr4:122164600-122165200	Active TSS	NHLF	lung

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