Variant report

Variant	nsv2810
Chromosome Location	chr1:150835173-150879869
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:819)
CpG islands
(count:795)
Chromatin interactive
region (count:71)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:819 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr1:150854264-150854361	HepG2	liver:	n/a	n/a
2	ARID3A	chr1:150848492-150848751	HepG2	liver:	n/a	n/a
3	ARID3A	chr1:150847414-150847716	HepG2	liver:	n/a	n/a
4	ARID3A	chr1:150848959-150849638	HepG2	liver:	n/a	n/a
5	ARID3A	chr1:150849137-150849576	K562	blood:	n/a	n/a
6	ATF1	chr1:150849147-150849560	K562	blood:	n/a	n/a
7	ATF2	chr1:150849175-150849557	GM12878	blood:	n/a	n/a
8	ATF2	chr1:150849163-150849534	GM12878	blood:	n/a	n/a
9	ATF2	chr1:150849115-150849585	H1-hESC	embryonic stem cell:	n/a	n/a
10	ATF2	chr1:150849167-150849542	H1-hESC	embryonic stem cell:	n/a	n/a
11	ATF3	chr1:150849167-150849576	K562	blood:	n/a	n/a
12	ATF3	chr1:150849121-150849599	A549	lung:	n/a	n/a
13	ATF3	chr1:150849161-150849522	A549	lung:	n/a	n/a
14	BATF	chr1:150862405-150862637	GM12878	blood:	n/a	n/a
15	BCL3	chr1:150849080-150849642	A549	lung:	n/a	chr1:150849216-150849229
16	BCLAF1	chr1:150849025-150849553	GM12878	blood:	n/a	chr1:150849216-150849229
17	BDP1	chr1:150849260-150849569	Hela-S3	cervix:	n/a	n/a
18	BHLHE40	chr1:150848684-150849575	GM12878	blood:	n/a	n/a
19	BHLHE40	chr1:150863498-150863527	K562	blood:	n/a	n/a
20	BHLHE40	chr1:150849177-150849494	HepG2	liver:	n/a	n/a
21	BHLHE40	chr1:150848978-150849544	K562	blood:	n/a	n/a
22	BRCA1	chr1:150849343-150849418	HepG2	liver:	n/a	n/a
23	BRCA1	chr1:150849187-150849580	Hela-S3	cervix:	n/a	n/a
24	BRCA1	chr1:150868189-150868448	Hela-S3	cervix:	n/a	n/a
25	CBX3	chr1:150849102-150849597	K562	blood:	n/a	n/a
26	CBX3	chr1:150872403-150872739	K562	blood:	n/a	n/a
27	CCNT2	chr1:150848124-150849476	K562	blood:	n/a	chr1:150848978-150848987
28	CEBPB	chr1:150853788-150854572	Hela-S3	cervix:	n/a	n/a
29	CEBPB	chr1:150847267-150847859	MCF-7	breast:	n/a	chr1:150847554-150847565 chr1:150847554-150847567 chr1:150847554-150847565 chr1:150847553-150847570 chr1:150847554-150847567 chr1:150847555-150847566
30	CEBPB	chr1:150849179-150849631	HepG2	liver:	n/a	n/a
31	CEBPB	chr1:150876134-150876269	K562	blood:	n/a	n/a
32	CEBPB	chr1:150849874-150850290	K562	blood:	n/a	chr1:150850154-150850165
33	CEBPB	chr1:150848850-150849632	HCT-116	colon:	n/a	n/a
34	CEBPB	chr1:150868187-150868426	IMR90	lung:	n/a	n/a
35	CEBPB	chr1:150847705-150847911	K562	blood:	n/a	chr1:150847858-150847871 chr1:150847858-150847871 chr1:150847860-150847871 chr1:150847858-150847871 chr1:150847860-150847871
36	CEBPB	chr1:150849099-150849597	A549	lung:	n/a	n/a
37	CEBPB	chr1:150853986-150854588	A549	lung:	n/a	n/a
38	CEBPB	chr1:150849194-150849523	K562	blood:	n/a	n/a
39	CEBPB	chr1:150853819-150854532	A549	lung:	n/a	n/a
40	CEBPB	chr1:150848790-150849625	HCT-116	colon:	n/a	n/a
41	CEBPB	chr1:150868189-150868415	HepG2	liver:	n/a	n/a
42	CEBPB	chr1:150847437-150847930	HepG2	liver:	n/a	chr1:150847858-150847871 chr1:150847554-150847565 chr1:150847554-150847567 chr1:150847554-150847565 chr1:150847553-150847570 chr1:150847858-150847871 chr1:150847860-150847871 chr1:150847858-150847871 chr1:150847554-150847567 chr1:150847555-150847566 chr1:150847860-150847871
43	CEBPB	chr1:150849101-150849619	HepG2	liver:	n/a	n/a
44	CEBPB	chr1:150849262-150849536	HepG2	liver:	n/a	n/a
45	CEBPB	chr1:150847688-150847993	IMR90	lung:	n/a	chr1:150847858-150847871 chr1:150847858-150847871 chr1:150847860-150847871 chr1:150847858-150847871 chr1:150847860-150847871
46	CEBPB	chr1:150868051-150868588	MCF-7	breast:	n/a	n/a
47	CEBPB	chr1:150868032-150868488	MCF-7	breast:	n/a	n/a
48	CEBPB	chr1:150849083-150849585	ECC-1	luminal epithelium:	n/a	n/a
49	CEBPB	chr1:150868126-150868456	A549	lung:	n/a	n/a
50	CEBPB	chr1:150849105-150849621	A549	lung:	n/a	n/a

(count:795 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:150849160-150849210	HMEC	breast:	n/a
2	chr1:150849400-150849450	SAEC	small airway:	n/a
3	chr1:150849160-150849210	HMEC	breast:	n/a
4	chr1:150849400-150849450	SAEC	small airway:	n/a
5	chr1:150849964-150850014	NH-A	brain:	n/a
6	chr1:150849149-150849199	AG04450	lung:	fetal
7	chr1:150850380-150850430	AG04450	lung:	fetal
8	chr1:150849160-150849210	HRE	kidney:	n/a
9	chr1:150849166-150849216	NHDF-neo	bronchial:	n/a
10	chr1:150849332-150849382	AG04449	skin:	fetal
11	chr1:150849149-150849199	LNCaP	prostate:	n/a
12	chr1:150849805-150849855	HCF	heart:	n/a
13	chr1:150849964-150850014	MCF-7	breast:	n/a
14	chr1:150850380-150850430	ovcar-3	ovarian:	n/a
15	chr1:150849160-150849210	U87	brain:	n/a
16	chr1:150849400-150849450	MCF10A-Er-Src	breast:	n/a
17	chr1:150849332-150849382	SK-N-SH	brain:	n/a
18	chr1:150849332-150849382	GM06990	blood:	n/a
19	chr1:150849166-150849216	Hepatocyte	liver:	n/a
20	chr1:150849400-150849450	PFSK-1	brain:	n/a
21	chr1:150852135-150852185	BJ	skin:	n/a
22	chr1:150848739-150848789	GM12878	blood:	n/a
23	chr1:150848739-150848789	SK-N-SH	brain:	n/a
24	chr1:150849166-150849216	ovcar-3	ovarian:	n/a
25	chr1:150849166-150849216	GM19239	blood:	n/a
26	chr1:150849400-150849450	HEEpiC	esophagus:	n/a
27	chr1:150848739-150848789	HL-60	blood:	n/a
28	chr1:150849332-150849382	A549	lung:	n/a
29	chr1:150849805-150849855	NH-A	brain:	n/a
30	chr1:150849805-150849855	PrEC	prostate:	n/a
31	chr1:150849149-150849199	Hepatocyte	liver:	n/a
32	chr1:150848739-150848789	HRE	kidney:	n/a
33	chr1:150848739-150848789	GM12891	blood:	n/a
34	chr1:150849160-150849210	HCM	heart:	n/a
35	chr1:150849400-150849450	ECC-1	luminal epithelium:	n/a
36	chr1:150849160-150849210	IMR90	lung:	fetal
37	chr1:150849332-150849382	NHBE	bronchial:	n/a
38	chr1:150848448-150848498	GM06990	blood:	n/a
39	chr1:150849964-150850014	PFSK-1	brain:	n/a
40	chr1:150846117-150846167	BJ	skin:	n/a
41	chr1:150849332-150849382	HNPCEpiC	eye:	n/a
42	chr1:150849166-150849216	ProgFib	skin:	n/a
43	chr1:150849166-150849216	HepG2	liver:	n/a
44	chr1:150849964-150850014	HPAEpiC	pulmonary alveolar:	n/a
45	chr1:150849160-150849210	HEK293	kidney:	embryo
46	chr1:150852135-150852185	HEEpiC	esophagus:	n/a
47	chr1:150849805-150849855	PANC-1	pancreas:	n/a
48	chr1:150849332-150849382	HAEpiC	amniotic membrane:	n/a
49	chr1:150850380-150850430	BE2_C	brain:	n/a
50	chr1:150846117-150846167	IMR90	lung:	fetal

(count:71 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr1:150837588..150840094-chr1:150844592..150846095,2	MCF-7	breast:
2	chr1:150848907..150850900-chr1:150866879..150869881,3	MCF-7	breast:
3	chr1:150878790..150879531-chr1:150895034..150895606,2	MCF-7	breast:
4	chr1:150549206..150551464-chr1:150847559..150850045,2	K562	blood:
5	chr1:150835101..150837976-chr1:150840921..150842454,2	K562	blood:
6	chr1:150847696..150850504-chr1:150946094..150948149,2	K562	blood:
7	chr1:150805087..150807211-chr1:150850902..150853301,2	MCF-7	breast:
8	chr1:150848716..150851402-chr1:150897221..150900291,3	MCF-7	breast:
9	chr1:150847751..150849634-chr1:150864149..150866867,2	MCF-7	breast:
10	chr1:150877283..150879552-chr1:150896139..150898336,2	MCF-7	breast:
11	chr1:150847731..150849909-chr1:150942826..150945486,2	K562	blood:
12	chr1:150833898..150836074-chr1:150842192..150844989,2	MCF-7	breast:
13	chr1:150842114..150842998-chr1:150894692..150895584,2	MCF-7	breast:
14	chr1:150539815..150542556-chr1:150853753..150855583,2	K562	blood:
15	chr1:150848210..150848854-chr1:150951690..150952505,2	K562	blood:
16	chr1:150830646..150832634-chr1:150847170..150848850,2	MCF-7	breast:
17	chr1:150847356..150848927-chr1:150849575..150851202,2	K562	blood:
18	chr1:150839484..150841423-chr1:150896360..150899250,2	MCF-7	breast:
19	chr1:150849390..150851277-chr1:150877417..150879109,2	MCF-7	breast:
20	chr1:150848386..150850942-chr1:150853921..150858032,4	K562	blood:
21	chr1:150847503..150849791-chr1:150897618..150900781,3	K562	blood:
22	chr1:150843610..150846514-chr1:150847702..150849415,3	MCF-7	breast:
23	chr1:150863507..150866483-chr1:151030495..151033374,3	MCF-7	breast:
24	chr1:150533054..150535535-chr1:150864232..150866971,2	MCF-7	breast:
25	chr1:150846616..150850276-chr1:150942456..150948926,7	MCF-7	breast:
26	chr1:150848892..150849485-chr7:140396172..140397047,2	MCF-7	breast:
27	chr1:150542533..150544635-chr1:150845972..150847579,2	MCF-7	breast:
28	chr1:150834498..150836175-chr1:150838214..150840424,2	K562	blood:
29	chr1:150859611..150863685-chr1:150866729..150869931,3	K562	blood:
30	chr1:150865101..150868127-chr1:150868317..150870783,3	K562	blood:
31	chr1:150848782..150849437-chr4:83351258..83351829,2	Hela-S3	cervix:
32	chr1:150600707..150603180-chr1:150865462..150867382,2	MCF-7	breast:
33	chr1:150847931..150851587-chr1:150853004..150856091,6	K562	blood:
34	chr1:150867829..150869388-chr1:150873614..150875595,2	MCF-7	breast:
35	chr1:150846965..150851829-chr1:150851958..150856513,6	MCF-7	breast:
36	chr1:150865101..150868127-chr1:150868317..150870783,3	K562	blood:
37	chr1:150538508..150540794-chr1:150868102..150869659,2	K562	blood:
38	chr1:150533798..150536086-chr1:150845330..150849365,4	MCF-7	breast:
39	chr1:150849097..150850809-chr1:150979255..150981896,2	MCF-7	breast:
40	chr1:150846965..150851829-chr1:150851958..150856513,6	MCF-7	breast:
41	chr1:150848386..150850942-chr1:150853921..150858032,4	K562	blood:
42	chr1:150834498..150838027-chr1:150838214..150842454,5	K562	blood:
43	chr1:150877469..150879238-chr1:150945811..150948116,2	MCF-7	breast:
44	chr1:150842463..150846466-chr1:150846939..150849230,4	K562	blood:
45	chr1:150833898..150836074-chr1:150842192..150844989,2	MCF-7	breast:
46	chr1:150848583..150851950-chr1:150857256..150860143,3	MCF-7	breast:
47	chr1:150835101..150837976-chr1:150840921..150842454,2	K562	blood:
48	chr1:150525936..150528012-chr1:150866007..150868752,2	MCF-7	breast:
49	chr1:150835862..150838203-chr1:150950221..150953041,2	K562	blood:
50	chr1:150847223..150849804-chr14:20928193..20929999,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARNT-1	chr1:150853712-150854159	NONHSAT006334
2	lnc-SETDB1-5	chr1:150850560-150850851	NONHSAT006333

No data

Variant related genes	Relation type
CYCSP51	TF binding region
ENSG00000224800	TF binding region
ENSG00000212512	TF binding region
ARNT	TF binding region
CYCSP51	CpG island
ENSG00000224800	CpG island
ENSG00000212512	CpG island
ARNT	CpG island
ENSG00000231073	chromatin interactions
ENSG00000143418	chromatin interactions
ENSG00000145293	chromatin interactions
ENSG00000143384	chromatin interactions
ENSG00000143420	chromatin interactions
ENSG00000143379	chromatin interactions
ENSG00000143363	chromatin interactions
ENSG00000163125	chromatin interactions
ENSG00000143437	chromatin interactions
ENSG00000264508	chromatin interactions
ENSG00000090266	chromatin interactions
ENSG00000165782	chromatin interactions
ENSG00000264584	chromatin interactions
ENSG00000143409	chromatin interactions
ENSG00000203804	chromatin interactions
ENSG00000224800	chromatin interactions
ENSG00000152795	chromatin interactions
ENSG00000212512	chromatin interactions
ENSG00000197622	chromatin interactions
ENSG00000240889	chromatin interactions

Extended variants
information (count: 1388 )
Associated
traits (count: 121 )

Variant overlapped rSNPs/rCNVs (count:1388 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs76943565	chr1:150835187-150835188	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs77969618	chr1:150835188-150835189	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs374455395	chr1:150835189-150835190	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs76265459	chr1:150835191-150835192	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs76784682	chr1:150835192-150835193	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs56147665	chr1:150835211-150835212	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs189858139	chr1:150835233-150835234	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs182481225	chr1:150835239-150835240	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs184829745	chr1:150835272-150835273	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs188421047	chr1:150835273-150835274	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs75532024	chr1:150835287-150835288	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs587767304	chr1:150835295-150835296	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs587637299	chr1:150835311-150835312	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs146132507	chr1:150835337-150835338	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs587599564	chr1:150835342-150835343	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs587678428	chr1:150835353-150835354	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs587735850	chr1:150835358-150835359	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs587594753	chr1:150835420-150835421	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs180843995	chr1:150835442-150835443	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs587723935	chr1:150835460-150835461	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs587607306	chr1:150835470-150835471	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs587655778	chr1:150835482-150835483	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs143880940	chr1:150835527-150835528	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs75067056	chr1:150835544-150835545	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs587743319	chr1:150835569-150835570	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs587613001	chr1:150835627-150835628	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs587700006	chr1:150835634-150835635	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs11204733	chr1:150835666-150835667	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
29	rs185883517	chr1:150835674-150835675	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs587690024	chr1:150835705-150835706	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs587764992	chr1:150835711-150835712	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs587646335	chr1:150835753-150835754	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs587697635	chr1:150835780-150835781	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs587759565	chr1:150835807-150835808	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs141477218	chr1:150835810-150835811	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs587656312	chr1:150835811-150835812	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs75793523	chr1:150835831-150835832	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs76929704	chr1:150835832-150835833	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs587737893	chr1:150835859-150835860	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs377528777	chr1:150835873-150835874	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs370736565	chr1:150835933-150835934	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs587771179	chr1:150835939-150835940	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs111593726	chr1:150835976-150835977	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs587706793	chr1:150836103-150836104	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs112087145	chr1:150836115-150836116	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs587603021	chr1:150836122-150836123	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs587662919	chr1:150836160-150836161	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs587715785	chr1:150836217-150836218	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs191429317	chr1:150836246-150836247	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs199720361	chr1:150836374-150836375	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:121)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Cancer	21129771	CNVD
Non-small cell lung cancer	21385341	CNVD
Autosomal dominant nocturnal frontal lobe epilepsy	18472482	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-small cell lung cancer	20864512	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thrombocytopenia-absent radius syndrome	21933853	CNVD
Psychiatric disorder	22848183	CNVD
Ewing''s sarcoma	21437220	CNVD
Liposarcoma	21253554	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Breast cancer	20409316	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17393978	CNVD
Cervical cancer	21062161	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	21183584	CNVD
Multiple myeloma	16461302	CNVD
Lung cancer	18438408	CNVD
Rett syndrome	21593744	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Systemic lupus erythematosus	21956041	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Non-small cell lung cancer	21829676	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	17899364	CNVD
Bladder cancer	19088036	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21611746	CNVD
Retinoblastoma	19183342	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Ewing''s sarcoma	17952124	CNVD
Osteosarcoma	17242211	CNVD
Ovarian cancer	17242211	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Schizophrenia	18990708	CNVD
Sudden cardiac death	19188705	CNVD
Plasma-cell dyscrasia	16705089	CNVD
Myeloma	17024118	CNVD
Cancer	17060936	CNVD
Multiple myeloma	16616336	CNVD
Type 2 diabetes	19141583	CNVD
Chordoma	18071362	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Urothelial carcinoma	21177765	CNVD
Burkitt''s lymphoma	19759907	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Follicular lymphoma	18703704	CNVD
Breast cancer	21509527	CNVD
Bladder cancer	21909424	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Myelofibrosis	22110671	CNVD
Liver carcinoma	19366792	CNVD
Testicular germ cell tumor	18059402	CNVD
Trisomy 5 syndrome	21098271	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Gastrointestinal cancer	16790693	CNVD
Pancreatic cancer	17952125	CNVD
early-passage human iPS cells	21368824	CNVD
Autism	21865298	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Incontinentia Pigmenti	22033527	CNVD
Breast cancer	22522925	CNVD
Crohn''s disease	21956041	CNVD
Cancer	21272361	CNVD
Multiple sclerosis	20428171	CNVD

Chromatin state (count:955 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150807400-150847000	Weak transcription	Colonic Mucosa	Colon
2	chr1:150808800-150847000	Weak transcription	Psoas Muscle	Psoas
3	chr1:150809200-150846800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:150809600-150846000	Weak transcription	Pancreas	Pancrea
5	chr1:150810400-150846600	Weak transcription	Fetal Heart	heart
6	chr1:150812000-150847000	Weak transcription	Gastric	stomach
7	chr1:150812400-150840600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:150812400-150842000	Weak transcription	Esophagus	oesophagus
9	chr1:150812400-150846800	Weak transcription	Fetal Kidney	kidney
10	chr1:150812600-150846000	Weak transcription	Small Intestine	intestine
11	chr1:150812600-150846800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr1:150814800-150839600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr1:150815400-150842400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr1:150815400-150846800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr1:150815600-150838000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr1:150820600-150846800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr1:150821200-150846600	Weak transcription	Aorta	Aorta
18	chr1:150821200-150846600	Weak transcription	Brain Hippocampus Middle	brain
19	chr1:150821200-150846800	Weak transcription	Brain Anterior Caudate	brain
20	chr1:150821200-150848600	Weak transcription	Spleen	Spleen
21	chr1:150822400-150846800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr1:150825000-150846600	Weak transcription	K562	blood
23	chr1:150825000-150848000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr1:150825200-150846600	Weak transcription	Fetal Brain Female	brain
25	chr1:150825200-150846800	Weak transcription	Brain Substantia Nigra	brain
26	chr1:150825200-150846800	Weak transcription	Fetal Brain Male	brain
27	chr1:150825400-150846000	Weak transcription	NHLF	lung
28	chr1:150825400-150846200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr1:150825600-150846800	Weak transcription	HSMMtube	muscle
30	chr1:150826000-150847800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr1:150826400-150845800	Weak transcription	HepG2	liver
32	chr1:150826600-150846800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr1:150827000-150840200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr1:150827000-150841600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr1:150827000-150848200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr1:150827400-150846600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr1:150827600-150840400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr1:150827600-150840600	Weak transcription	Placenta	Placenta
39	chr1:150827800-150847000	Weak transcription	A549	lung
40	chr1:150828000-150847000	Weak transcription	Stomach Smooth Muscle	stomach
41	chr1:150828400-150845200	Weak transcription	Fetal Intestine Large	intestine
42	chr1:150828400-150847000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr1:150828400-150847000	Weak transcription	Brain Germinal Matrix	brain
44	chr1:150828600-150846400	Weak transcription	Dnd41	blood
45	chr1:150829400-150840200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr1:150829400-150841400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr1:150829400-150844200	Weak transcription	Thymus	Thymus
48	chr1:150829400-150847000	Weak transcription	Right Ventricle	heart
49	chr1:150829600-150835600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr1:150829800-150841600	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links