Variant report
| Variant | nsv291240 |
|---|---|
| Chromosome Location | chr4:7483610-7483845 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs201048281 | chr4:7483614-7483615 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs55739784 | chr4:7483618-7483619 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 3 | rs11937662 | chr4:7483656-7483657 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs550096680 | chr4:7483657-7483658 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs565229851 | chr4:7483664-7483665 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs56062331 | chr4:7483676-7483677 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs532812366 | chr4:7483680-7483681 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs13140888 | chr4:7483703-7483704 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs550965691 | chr4:7483710-7483711 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs55923357 | chr4:7483715-7483716 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs56377216 | chr4:7483731-7483732 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs566428694 | chr4:7483736-7483737 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs56365226 | chr4:7483771-7483772 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs55764518 | chr4:7483775-7483776 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs56033134 | chr4:7483796-7483797 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs13146480 | chr4:7483798-7483799 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs571688692 | chr4:7483834-7483835 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs112160956 | chr4:7483836-7483837 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs567382561 | chr4:7483838-7483839 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs113111023 | chr4:7483843-7483844 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:55)
| Disease | PMID | Source |
|---|---|---|
| Wilms tumour | 21544195 | CNVD |
| Melanoma | 20688739 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Non-syndromic sensorineural hearing loss | 20606397 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Basal cell lymphoma | 17053054 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Neuroblastoma | 17533364 | CNVD |
| head and neck squamous cell carcinoma | 17671120 | CNVD |
| Cancer | 21637783 | CNVD |
| Melanoma | 21693616 | CNVD |
| Squamous cell cancer | 21044232 | CNVD |
| Colorectal cancer | 20709793 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Non-small cell lung cancer | 21044232 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Cervical cancer | 21062161 | CNVD |
| Gastrointestinal stromal cancer | 16982739 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Chordoma | 21602918 | CNVD |
| HIV/AIDS | 22032296 | CNVD |
| Neuroblastoma | 18923191 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Autism | 22495311 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Chronic lymphocytic leukemia | 20421269 | CNVD |
| Breast cancer | 21509527 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Hirschsprung''s Disease | 21712996 | CNVD |
| Schizophrenia | 22241247 | CNVD |
| Autosomal-dominant microtia | 18179897 | CNVD |
| Glioma | 17123091 | CNVD |
| Colorectal cancer | 20459617 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Melanoma | 20877625 | CNVD |
| Breast cancer | 22522925 | CNVD |
| Pancreatic cancer | 17952125 | CNVD |
| Cancer | 20164919 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:7483600-7486400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
