Variant report

Variant	nsv31186
Chromosome Location	chr11:86777656-86777659
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86775970..86778427-chr11:86780728..86783153,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166575	chromatin interactions

Extended variants
information (count: 1 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs571906738	chr11:86777658-86777659	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	21364760	CNVD
Ovarian neoplasms	16753589	CNVD
Breast cancer	16608533	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Sudden cardiac death	19188705	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Developmental delay	21147756	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Ductal carcinoma	22052326	CNVD
small cell lung cancer	20016488	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Attention deficit hyperactivity disorder	22241247	CNVD
Breast cancer	21958427	CNVD
Breast cancer	17133270	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Obesity	20622171	CNVD

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86750800-86780600	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr11:86750800-86782000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr11:86750800-86787400	Weak transcription	A549	lung
4	chr11:86751000-86786800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:86751000-86787400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:86751200-86785600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:86751400-86786400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:86751600-86787000	Weak transcription	Aorta	Aorta
9	chr11:86755200-86779000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:86755400-86780200	Weak transcription	Adipose Nuclei	Adipose
11	chr11:86755400-86780400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr11:86756400-86782800	Weak transcription	Fetal Intestine Small	intestine
13	chr11:86758200-86778600	Weak transcription	K562	blood
14	chr11:86758200-86780000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr11:86758200-86780400	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:86758200-86783200	Weak transcription	Primary T cells from cord blood	blood
17	chr11:86758200-86786400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:86758400-86778800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:86767400-86779000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr11:86767800-86782800	Weak transcription	Left Ventricle	heart
21	chr11:86769000-86786400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:86769200-86786400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr11:86769200-86786800	Weak transcription	Brain Anterior Caudate	brain
24	chr11:86769200-86791200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr11:86769200-86792400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr11:86769400-86778600	Weak transcription	Liver	Liver
27	chr11:86769600-86784800	Weak transcription	Ovary	ovary
28	chr11:86769600-86786600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:86770200-86784200	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr11:86770400-86808200	Weak transcription	HUVEC	blood vessel
31	chr11:86771000-86786600	Weak transcription	Fetal Brain Male	brain
32	chr11:86771200-86786800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:86771400-86778800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:86771800-86786000	Weak transcription	Fetal Lung	lung
35	chr11:86773000-86778800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:86773000-86783000	Weak transcription	NHDF-Ad	bronchial
37	chr11:86773000-86790800	Weak transcription	NHLF	lung
38	chr11:86773000-86792000	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr11:86774200-86782800	Weak transcription	Fetal Stomach	stomach
40	chr11:86774600-86792400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr11:86774800-86786400	Weak transcription	Lung	lung
42	chr11:86774800-86786800	Weak transcription	Pancreas	Pancrea
43	chr11:86774800-86786800	Weak transcription	Right Ventricle	heart
44	chr11:86774800-86787600	Weak transcription	NHEK	skin
45	chr11:86774800-86806400	Weak transcription	Small Intestine	intestine
46	chr11:86775000-86778600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr11:86775000-86786600	Weak transcription	Colon Smooth Muscle	Colon
48	chr11:86775200-86780400	Weak transcription	HepG2	liver
49	chr11:86775600-86786400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr11:86775600-86791400	Weak transcription	HSMM	muscle

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