The 2.0 version of rSNPBase

Variant report

Variant nsv315297
Chromosome Location chr5:53358362-53358364
allele n/a
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:53316200-53387400 Weak transcription Left Ventricle heart
2 chr5:53337400-53359200 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr5:53337400-53366400 Weak transcription Fetal Adrenal Gland Adrenal Gland
4 chr5:53340400-53359000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr5:53341600-53359200 Weak transcription Right Ventricle heart
6 chr5:53341800-53364400 Weak transcription Pancreatic Islets Pancreatic Islet
7 chr5:53343000-53368000 Weak transcription Pancreas Pancrea
8 chr5:53343600-53376400 Weak transcription K562 blood
9 chr5:53346000-53358400 Weak transcription Psoas Muscle Psoas
10 chr5:53346000-53371200 Weak transcription Aorta Aorta
11 chr5:53346200-53363600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
12 chr5:53346400-53365600 Weak transcription Fetal Stomach stomach
13 chr5:53347400-53358600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr5:53350200-53360400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
15 chr5:53351200-53358400 Weak transcription NHEK skin
16 chr5:53351600-53358600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr5:53352200-53358800 Weak transcription Primary T cells from cord blood blood
18 chr5:53355200-53358600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr5:53355800-53366400 Weak transcription Fetal Intestine Large intestine
20 chr5:53356200-53359400 Strong transcription Breast Myoepithelial Primary Cells Breast
21 chr5:53356600-53369200 Weak transcription Fetal Lung lung
22 chr5:53356800-53359000 Weak transcription iPS-15b Cell Line embryonic stem cell
23 chr5:53357000-53358800 Weak transcription Spleen Spleen
24 chr5:53357000-53408000 Weak transcription Primary T helper cells fromperipheralblood blood
25 chr5:53357400-53363800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr5:53357600-53358600 Weak transcription HUES64 Cell Line embryonic stem cell
27 chr5:53357600-53359000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr5:53357600-53359000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
29 chr5:53357600-53359200 Enhancers NHDF-Ad bronchial
30 chr5:53357600-53360200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
31 chr5:53357800-53359000 Weak transcription Right Atrium heart
32 chr5:53357800-53359200 Weak transcription H1 Cell Line embryonic stem cell
33 chr5:53357800-53359400 Enhancers Fetal Heart heart
34 chr5:53357800-53366000 Weak transcription Fetal Intestine Small intestine
35 chr5:53357800-53369600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
36 chr5:53358000-53358600 Enhancers Osteobl bone
37 chr5:53358000-53358800 Weak transcription HUES6 Cell Line embryonic stem cell
38 chr5:53358000-53360800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
39 chr5:53358200-53359200 Enhancers Muscle Satellite Cultured Cells --
40 chr5:53358200-53359800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr5:53358200-53368800 Weak transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015