The 2.0 version of rSNPBase

Variant report

Variant nsv316767
Chromosome Location chr5:52966360-52966364
allele n/a
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:52904400-52966600 Weak transcription Osteobl bone
2 chr5:52920800-52978800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr5:52929000-52981800 Weak transcription Primary T helper naive cells from peripheral blood blood
4 chr5:52935200-52978000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
5 chr5:52938200-52970200 Weak transcription NH-A brain
6 chr5:52938400-52967600 Weak transcription Fetal Kidney kidney
7 chr5:52938600-52971000 Weak transcription Muscle Satellite Cultured Cells --
8 chr5:52940000-52982000 Weak transcription Skeletal Muscle Male skeletal muscle
9 chr5:52941400-52980200 Weak transcription HepG2 liver
10 chr5:52941400-52985200 Weak transcription Rectal Smooth Muscle rectum
11 chr5:52942400-52973400 Weak transcription Fetal Heart heart
12 chr5:52944000-52969800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
13 chr5:52944200-52968200 Weak transcription K562 blood
14 chr5:52945400-52974600 Weak transcription Primary T helper cells PMA-I stimulated --
15 chr5:52945400-52979000 Weak transcription HMEC breast
16 chr5:52945400-52980200 Weak transcription Primary T killer memory cells from peripheral blood blood
17 chr5:52945400-52980800 Weak transcription Rectal Mucosa Donor 31 rectum
18 chr5:52945400-52981000 Weak transcription Psoas Muscle Psoas
19 chr5:52945400-52985000 Weak transcription Brain Hippocampus Middle brain
20 chr5:52945600-52971600 Weak transcription Fetal Lung lung
21 chr5:52945600-52978400 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr5:52945600-52980800 Weak transcription GM12878-XiMat blood
23 chr5:52945600-52981600 Weak transcription Skeletal Muscle Female skeletal muscle
24 chr5:52945600-52983000 Weak transcription Fetal Muscle Trunk muscle
25 chr5:52945600-52983600 Weak transcription Fetal Thymus thymus
26 chr5:52946800-52981400 Weak transcription NHEK skin
27 chr5:52955800-52967200 Weak transcription Primary T regulatory cells fromperipheralblood blood
28 chr5:52955800-52982200 Weak transcription Dnd41 blood
29 chr5:52956000-52982600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr5:52961200-52974800 Weak transcription HSMMtube muscle
31 chr5:52961400-52970200 Weak transcription Placenta Placenta
32 chr5:52961600-52967000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
33 chr5:52961600-52967000 Weak transcription Primary monocytes fromperipheralblood blood
34 chr5:52961600-52967600 Weak transcription Thymus Thymus
35 chr5:52961600-52975000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr5:52961600-52978800 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr5:52961600-52984200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
38 chr5:52961800-52967600 Weak transcription Duodenum Mucosa Duodenum
39 chr5:52961800-52968800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
40 chr5:52961800-52978200 Weak transcription Left Ventricle heart
41 chr5:52961800-52978800 Weak transcription Stomach Smooth Muscle stomach
42 chr5:52961800-52979800 Weak transcription Aorta Aorta
43 chr5:52961800-52979800 Weak transcription Fetal Muscle Leg muscle
44 chr5:52961800-52989200 Weak transcription Ovary ovary
45 chr5:52962200-52978200 Weak transcription Liver Liver
46 chr5:52962400-52967200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr5:52962400-52971600 Weak transcription Colon Smooth Muscle Colon
48 chr5:52962400-52979000 Weak transcription NHDF-Ad bronchial
49 chr5:52962400-52979800 Weak transcription Pancreas Pancrea
50 chr5:52962600-52966800 Weak transcription HUES48 Cell Line embryonic stem cell

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Last update: Aug 31, 2015