Variant report

Variant	nsv328811
Chromosome Location	chr5:70928971-70936086
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:70929199..70932384-chr5:70932859..70936890,5	MCF-7	breast:
2	chr5:70930390..70934601-chr5:70935196..70939070,4	K562	blood:
3	chr5:70865719..70868143-chr5:70930530..70933476,2	K562	blood:
4	chr5:70829837..70831785-chr5:70927943..70929990,2	MCF-7	breast:
5	chr5:70926856..70929109-chr5:70934806..70937462,2	MCF-7	breast:
6	chr5:70929199..70932384-chr5:70932859..70936890,5	MCF-7	breast:
7	chr5:70883251..70886427-chr5:70928765..70931034,4	MCF-7	breast:
8	chr5:70926856..70929109-chr5:70934806..70937462,2	MCF-7	breast:
9	chr5:70920053..70922603-chr5:70926278..70929720,3	K562	blood:
10	chr5:70930390..70934601-chr5:70935196..70939070,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000131844	chromatin interactions

Extended variants
information (count: 255 )
Associated
traits (count: 101 )

Variant overlapped rSNPs/rCNVs (count:255 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs575983535	chr5:70929000-70929001	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs370504874	chr5:70929051-70929052	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs529770419	chr5:70929078-70929079	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs548354465	chr5:70929119-70929120	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs79799150	chr5:70929133-70929134	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs277983	chr5:70929153-70929154	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
7	rs548499924	chr5:70929179-70929180	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs192833453	chr5:70929180-70929181	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs368275999	chr5:70929186-70929187	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs185424387	chr5:70929215-70929216	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs80225238	chr5:70929243-70929244	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs372836610	chr5:70929289-70929290	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs556834214	chr5:70929333-70929334	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs75871641	chr5:70929379-70929380	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs188454492	chr5:70929486-70929487	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs10071645	chr5:70929510-70929511	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
17	rs573335373	chr5:70929562-70929563	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs576714408	chr5:70929566-70929567	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs115887280	chr5:70929570-70929571	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs457977	chr5:70929599-70929600	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs191866020	chr5:70929643-70929644	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs184023662	chr5:70929706-70929707	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs147009132	chr5:70929739-70929740	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs10073617	chr5:70929757-70929758	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs562455851	chr5:70929777-70929778	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs544098662	chr5:70929820-70929821	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs138221324	chr5:70929847-70929848	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs143610233	chr5:70929957-70929958	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs187966009	chr5:70930032-70930033	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs180929958	chr5:70930098-70930099	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs564136919	chr5:70930117-70930118	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs531493722	chr5:70930126-70930127	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs549712282	chr5:70930182-70930183	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs115952350	chr5:70930218-70930219	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs536281185	chr5:70930271-70930272	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs558580529	chr5:70930280-70930281	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs371470935	chr5:70930289-70930290	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs566928754	chr5:70930309-70930310	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs562004535	chr5:70930314-70930315	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs534036375	chr5:70930331-70930332	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs187055625	chr5:70930346-70930347	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs546277290	chr5:70930350-70930351	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs564351569	chr5:70930359-70930360	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs190781805	chr5:70930369-70930370	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs538533220	chr5:70930391-70930392	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs181656425	chr5:70930393-70930394	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs575229624	chr5:70930408-70930409	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs541784043	chr5:70930422-70930423	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs147196330	chr5:70930453-70930454	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs374728633	chr5:70930454-70930455	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:101)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Multiple myeloma	17550852	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Breast cancer	22032731	CNVD
Prostate cancer	21965145	CNVD
Spinal muscular atrophy	21762474	CNVD
Esophageal cancer	20955586	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Ovarian cancer	20844748	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
Non-small cell lung cancer	21829676	CNVD
adenomatous polyposis	22470819	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Hepatocellular carcinoma	16750200	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Bladder cancer	21909424	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Breast cancer	17133270	CNVD
Breast cancer	19602461	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
abnormal development	18461090	CNVD
Merkel cell carcinoma	19020549	CNVD
Squamous cell cancer	20885788	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Ovarian cancer	21720365	CNVD
Breast cancer	21045282	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Myelodysplastic syndrome	18663149	CNVD
Spinal muscular atrophy	15981080	CNVD
Spinal muscular atrophy	18839960	CNVD
Spinal muscular atrophy	19716110	CNVD
Sezary syndrome	18413736	CNVD
Breast cancer	21990379	CNVD
Hirschsprung''s Disease	21712996	CNVD
Apoptosis	19488400	CNVD
Breast cancer	22048815	CNVD
Myelofibrosis	22110671	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Acute monocytic leukemia	16498392	CNVD
Colorectal cancer	20459617	CNVD
Gastric adenocarcinoma	19115996	CNVD
Spinal muscular atrophy	17160897	CNVD
Spinal muscular atrophy	17668391	CNVD
Spinal muscular atrophy	17668395	CNVD
Glioblastoma multiforme	22286061	CNVD
craniofacial dysmorphism	21918468	CNVD
Multiple myeloma	16616336	CNVD
Prostate cancer	16461572	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Acute myeloid leukemia	20729466	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:322 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:70884800-70934800	Weak transcription	Fetal Brain Male	brain
2	chr5:70893600-70930200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:70895800-70937800	Weak transcription	Colonic Mucosa	Colon
4	chr5:70897200-70930000	Weak transcription	Psoas Muscle	Psoas
5	chr5:70897400-70933800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:70897800-70944800	Weak transcription	Small Intestine	intestine
7	chr5:70898200-70944200	Weak transcription	Osteobl	bone
8	chr5:70898400-70935400	Weak transcription	NHDF-Ad	bronchial
9	chr5:70898400-70955000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:70898600-70948400	Weak transcription	Brain Germinal Matrix	brain
11	chr5:70900000-70944800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr5:70900200-70930800	Weak transcription	HMEC	breast
13	chr5:70900200-70945200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr5:70900400-70931000	Weak transcription	K562	blood
15	chr5:70900400-70933200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr5:70906600-70952400	Weak transcription	Stomach Mucosa	stomach
17	chr5:70907400-70932800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr5:70909000-70938200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr5:70909200-70931000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:70912200-70931000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr5:70912400-70936600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr5:70912600-70941800	Weak transcription	Colon Smooth Muscle	Colon
23	chr5:70912600-70943800	Weak transcription	A549	lung
24	chr5:70913000-70934200	Weak transcription	Fetal Brain Female	brain
25	chr5:70914200-70930400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr5:70914200-70938000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr5:70914200-70948800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:70915400-70950800	Weak transcription	NHLF	lung
29	chr5:70917000-70936400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr5:70917000-70945000	Weak transcription	Hela-S3	cervix
31	chr5:70917200-70930000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr5:70917200-70937800	Weak transcription	Aorta	Aorta
33	chr5:70917200-70942000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr5:70917400-70942600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr5:70918000-70942400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr5:70919400-70934800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr5:70919800-70930000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr5:70919800-70930200	Weak transcription	HSMMtube	muscle
39	chr5:70919800-70955000	Weak transcription	HUVEC	blood vessel
40	chr5:70920200-70930200	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr5:70920200-70932200	Weak transcription	Fetal Intestine Small	intestine
42	chr5:70923200-70936400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr5:70923200-70937600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr5:70923400-70930400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr5:70923400-70930800	Weak transcription	Fetal Kidney	kidney
46	chr5:70923600-70930200	Weak transcription	HSMM	muscle
47	chr5:70925400-70950600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr5:70925800-70929400	Strong transcription	Primary B cells from cord blood	blood
49	chr5:70926200-70930200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr5:70926200-70930400	Weak transcription	Gastric	stomach

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