Variant report

Variant	nsv349740
Chromosome Location	chr6:162177505-162181256
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 196 )
Associated
traits (count: 95 )

Variant overlapped rSNPs/rCNVs (count:196 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs113013802	chr6:162177526-162177527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs113428992	chr6:162177531-162177532	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs368979285	chr6:162177532-162177533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs374308139	chr6:162177533-162177534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs545475858	chr6:162177558-162177559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs6907382	chr6:162177561-162177562	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs188214003	chr6:162177616-162177617	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs543596739	chr6:162177620-162177621	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs542501593	chr6:162177635-162177636	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs535349817	chr6:162177672-162177673	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs193268337	chr6:162177679-162177680	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs527859010	chr6:162177680-162177681	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs547939519	chr6:162177693-162177694	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs183733120	chr6:162177695-162177696	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs533403655	chr6:162177762-162177763	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs142815603	chr6:162177781-162177782	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs187802098	chr6:162177833-162177834	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs151026470	chr6:162177903-162177904	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs548043897	chr6:162177904-162177905	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs553457162	chr6:162177923-162177924	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs559627176	chr6:162177933-162177934	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs567933401	chr6:162177946-162177947	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs113252552	chr6:162177947-162177948	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs373560960	chr6:162177976-162177977	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs191554928	chr6:162177998-162177999	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs375599190	chr6:162178059-162178060	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs183740132	chr6:162178070-162178071	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs539474026	chr6:162178075-162178076	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs111283338	chr6:162178115-162178116	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs142438851	chr6:162178139-162178140	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs144772330	chr6:162178164-162178165	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs368824454	chr6:162178175-162178176	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs115645953	chr6:162178193-162178194	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs572711817	chr6:162178204-162178205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs188850933	chr6:162178256-162178257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs573823760	chr6:162178263-162178264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs147898858	chr6:162178287-162178288	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs142194839	chr6:162178327-162178328	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs550205591	chr6:162178340-162178341	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs113343854	chr6:162178341-162178342	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs529219466	chr6:162178347-162178348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs548115956	chr6:162178389-162178390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs568007275	chr6:162178408-162178409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs533785645	chr6:162178413-162178414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs559445578	chr6:162178426-162178427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs547194203	chr6:162178473-162178474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs150132495	chr6:162178484-162178485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs114994334	chr6:162178487-162178488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs192524386	chr6:162178496-162178497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs112163896	chr6:162178503-162178504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:95)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Cancer	20164920	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	20838587	CNVD
Early-onset parkinson disease	21993715	CNVD
Glioblastoma	18772890	CNVD
Pancreatic cancer	20981101	CNVD
Autism	21360662	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Intellectual disability	22102821	CNVD
Parkinson disease	0	CNVD
Bipolar disorder	19114987	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:162169800-162184400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:162172400-162177800	Weak transcription	NH-A	brain
3	chr6:162173800-162184400	Weak transcription	Ovary	ovary
4	chr6:162177600-162178200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:162177800-162178200	Enhancers	NH-A	brain

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