Variant report

Variant	nsv353
Chromosome Location	chr11:63411216-63428498
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63414204..63416229-chr11:63438443..63440690,2	MCF-7	breast:
2	chr11:63417250..63419561-chr11:63424923..63427108,2	MCF-7	breast:
3	chr11:63420251..63422552-chr11:63423247..63425956,2	K562	blood:
4	chr11:63413943..63415778-chr11:63418159..63420803,2	K562	blood:
5	chr11:63426722..63428265-chr11:63429483..63431939,2	K562	blood:
6	chr11:63417205..63419913-chr11:63437420..63439431,2	MCF-7	breast:
7	chr11:63403732..63406487-chr11:63408867..63411360,2	MCF-7	breast:
8	chr11:63413938..63416131-chr11:63416938..63419102,2	MCF-7	breast:
9	chr11:63415770..63418142-chr11:63506169..63508549,2	K562	blood:
10	chr11:63419879..63422599-chr11:63437502..63439876,2	K562	blood:
11	chr11:63409427..63412324-chr11:63412826..63415681,2	MCF-7	breast:
12	chr11:63420251..63422552-chr11:63423247..63425956,2	K562	blood:
13	chr11:63414077..63415667-chr11:63448535..63450763,2	K562	blood:
14	chr11:63417250..63419561-chr11:63424923..63427108,2	MCF-7	breast:
15	chr11:63409061..63411794-chr11:63437483..63439260,2	MCF-7	breast:
16	chr11:63413943..63415778-chr11:63418159..63420803,2	K562	blood:
17	chr11:63409427..63412324-chr11:63412826..63415681,2	MCF-7	breast:
18	chr11:63413938..63416131-chr11:63416938..63419102,2	MCF-7	breast:
19	chr11:63397172..63398791-chr11:63415028..63417293,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RTN3-1	chr11:63418032-63418219	ENSG00000256789.1
2	lnc-RTN3-1	chr11:63426259-63426434	ENSG00000256789.1

No data

Variant related genes	Relation type
ENSG00000256789	chromatin interactions
ENSG00000184743	chromatin interactions
ENSG00000133318	chromatin interactions

Extended variants
information (count: 632 )
Associated
traits (count: 101 )

Variant overlapped rSNPs/rCNVs (count:632 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs202106535	chr11:63411235-63411236	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs190981294	chr11:63411248-63411249	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs2155180	chr11:63411262-63411263	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs145420466	chr11:63411285-63411286	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs368116784	chr11:63411293-63411294	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs548125218	chr11:63411325-63411326	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs34630980	chr11:63411330-63411331	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs67414745	chr11:63411331-63411332	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs5792298	chr11:63411332-63411333	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs200417606	chr11:63411333-63411334	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs12270678	chr11:63411447-63411448	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs535872506	chr11:63411456-63411457	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs531884488	chr11:63411468-63411469	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs183166108	chr11:63411534-63411535	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs538773531	chr11:63411561-63411562	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs186779177	chr11:63411604-63411605	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs200495090	chr11:63411642-63411643	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs534573423	chr11:63411664-63411665	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs554468070	chr11:63411700-63411701	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs573933731	chr11:63411701-63411702	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs151040560	chr11:63411710-63411711	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs189686726	chr11:63411751-63411752	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs374249048	chr11:63411775-63411776	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs140927104	chr11:63411822-63411823	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs545550119	chr11:63411834-63411835	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs148441781	chr11:63411840-63411841	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs386754291	chr11:63411841-63411842	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs374390649	chr11:63411842-63411843	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs535367628	chr11:63411855-63411856	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs5792299	chr11:63411876-63411877	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs12275497	chr11:63411898-63411899	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs373869030	chr11:63411900-63411901	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs555658592	chr11:63411912-63411913	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs527908565	chr11:63411921-63411922	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs12275507	chr11:63411947-63411948	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs548062670	chr11:63411970-63411971	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs561575284	chr11:63411995-63411996	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs150278071	chr11:63412034-63412035	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs572114593	chr11:63412036-63412037	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs113390456	chr11:63412071-63412072	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs569661809	chr11:63412110-63412111	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs76638267	chr11:63412211-63412212	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs183224202	chr11:63412233-63412234	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs565512507	chr11:63412236-63412237	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs188286428	chr11:63412321-63412322	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs554404729	chr11:63412411-63412412	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs568259164	chr11:63412465-63412466	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs537377788	chr11:63412485-63412486	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs556266267	chr11:63412534-63412535	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs575527768	chr11:63412544-63412545	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:101)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Glioblastoma multiforme	21138945	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Pituitary adenoma	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	21080181	CNVD
Smith-Lemli-Opitz syndrome	21572526	CNVD
Multiple myeloma	16461302	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Metanephric adenoma	20802469	CNVD
Chordoma	21602918	CNVD
Melanoma	18172304	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
ovarian endometriomas	16273235	CNVD
Breast cancer	21785460	CNVD
Breast cancer	16417655	CNVD
Myelofibrosis	22110671	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	17217626	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	21045282	CNVD
Breast cancer	21806811	CNVD
Breast cancer	22002566	CNVD
Ductal carcinoma	18381933	CNVD
Retinoblastoma	22278416	CNVD
Breast cancer	20953835	CNVD
oto-dental syndrome	17656375	CNVD
Asthma	21956041	CNVD
Breast cancer	17603634	CNVD
Ovarian neoplasms	16753589	CNVD
Non-small cell lung cancer	20864512	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21509527	CNVD
Anaplastic thyroid cancer	18753363	CNVD
Breast cancer	22522925	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Pancreatic cancer	17952125	CNVD
Prostate cancer	18779856	CNVD
Cancer	17160897	CNVD
Breast cancer	17001317	CNVD
Oral squamous cell carcinoma	16619035	CNVD
Intracranial aneurysm	16715129	CNVD
Colorectal cancer	16272173	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Colorectal cancer	16882699	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668395	CNVD
Spinal muscular atrophy	17668395	CNVD
Neonatal seizures	17668395	CNVD
Neonatal seizures	17668391	CNVD
Neuroticism	17667963	CNVD
Cancer	17916600	CNVD
Squamous cell cancer	19047905	CNVD
Multiple endocrine neoplasia type 1	19566914	CNVD
XY sex reversal	17503084	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668391	CNVD
Maculopathy	17646752	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD

Chromatin state (count:569 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63388800-63414200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:63390800-63414200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:63391200-63418600	Weak transcription	Psoas Muscle	Psoas
4	chr11:63393800-63426600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:63395000-63426800	Strong transcription	Dnd41	blood
6	chr11:63395600-63421000	Strong transcription	Fetal Muscle Trunk	muscle
7	chr11:63397800-63430800	Weak transcription	Fetal Brain Male	brain
8	chr11:63398800-63412400	Weak transcription	Pancreas	Pancrea
9	chr11:63398800-63420200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:63398800-63421400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:63398800-63426800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:63399000-63434000	Weak transcription	Small Intestine	intestine
13	chr11:63399200-63433800	Weak transcription	Fetal Heart	heart
14	chr11:63399800-63437800	Weak transcription	Fetal Brain Female	brain
15	chr11:63400400-63437600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:63400600-63431000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:63400800-63412400	Weak transcription	Aorta	Aorta
18	chr11:63402000-63416000	Strong transcription	Muscle Satellite Cultured Cells	--
19	chr11:63403400-63412400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:63403400-63415600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr11:63403400-63431000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr11:63403600-63412400	Weak transcription	Thymus	Thymus
23	chr11:63403800-63427200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr11:63404000-63412400	Weak transcription	Ovary	ovary
25	chr11:63404000-63412400	Weak transcription	Spleen	Spleen
26	chr11:63404000-63418000	Weak transcription	Fetal Lung	lung
27	chr11:63404000-63418800	Weak transcription	Gastric	stomach
28	chr11:63404000-63424400	Weak transcription	Esophagus	oesophagus
29	chr11:63405600-63416200	Strong transcription	Osteobl	bone
30	chr11:63406800-63417600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr11:63407600-63414400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:63407600-63416000	Strong transcription	HMEC	breast
33	chr11:63407600-63417200	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:63407600-63419800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr11:63407800-63411400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr11:63407800-63411800	Strong transcription	HUVEC	blood vessel
37	chr11:63407800-63414000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:63407800-63414800	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr11:63407800-63415800	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr11:63407800-63415800	Strong transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:63407800-63416000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:63407800-63416000	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr11:63407800-63416600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr11:63407800-63419200	Strong transcription	Placenta	Placenta
45	chr11:63407800-63421600	Strong transcription	Fetal Muscle Leg	muscle
46	chr11:63407800-63423400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr11:63407800-63426800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:63407800-63426800	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr11:63407800-63427400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr11:63408000-63411800	Strong transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links