Variant report

Variant	nsv397759
Chromosome Location	chr8:90104843-90110949
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 237 )
Associated
traits (count: 106 )

Variant overlapped rSNPs/rCNVs (count:237 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs77029011	chr8:90104843-90104844	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs533519559	chr8:90104855-90104856	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs539458620	chr8:90104858-90104859	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs188128433	chr8:90104959-90104960	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs373516465	chr8:90104961-90104962	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs13276945	chr8:90104962-90104963	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs13274815	chr8:90104975-90104976	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs552878699	chr8:90104987-90104988	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs551689092	chr8:90105030-90105031	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs574710392	chr8:90105069-90105070	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs541940112	chr8:90105078-90105079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs557132364	chr8:90105110-90105111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs1483376	chr8:90105115-90105116	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs545483675	chr8:90105126-90105127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs372273782	chr8:90105153-90105154	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs1240069	chr8:90105157-90105158	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs528796699	chr8:90105178-90105179	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs540955775	chr8:90105228-90105229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs116064904	chr8:90105245-90105246	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs529486095	chr8:90105262-90105263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs181024760	chr8:90105313-90105314	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs7825676	chr8:90105333-90105334	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs1240068	chr8:90105444-90105445	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs138260301	chr8:90105456-90105457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs36059490	chr8:90105460-90105461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs551502662	chr8:90105492-90105493	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs566894718	chr8:90105517-90105518	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs13279621	chr8:90105523-90105524	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs546917918	chr8:90105526-90105527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs79777531	chr8:90105562-90105563	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs10646016	chr8:90105629-90105630	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs34003378	chr8:90105638-90105639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs397941822	chr8:90105647-90105648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs185389700	chr8:90105668-90105669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs535653225	chr8:90105696-90105697	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs143931931	chr8:90105708-90105709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs575431567	chr8:90105718-90105719	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs190247947	chr8:90105720-90105721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs376273561	chr8:90105736-90105737	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs376109649	chr8:90105759-90105760	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs572843129	chr8:90105765-90105766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs1240067	chr8:90105826-90105827	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs368121519	chr8:90105842-90105843	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs371987018	chr8:90105852-90105853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs558967020	chr8:90105865-90105866	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs7014392	chr8:90105874-90105875	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs7018265	chr8:90105919-90105920	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs544426614	chr8:90105920-90105921	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs568706083	chr8:90105925-90105926	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs1240066	chr8:90105927-90105928	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:106)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Testicular cancer	18059402	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
Esophageal cancer	20955586	CNVD
Multiple myeloma	16461302	CNVD
abnormal development	18461090	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	16751803	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Cancer	21949371	CNVD
Non-small cell lung cancer	21829676	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute myeloid leukemia	21358987	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	21399628	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
small cell lung cancer	20016488	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	17393978	CNVD
Burkitt''s lymphoma	18698080	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Bladder cancer	19088036	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17899364	CNVD
Acute myeloid leukemia	21251322	CNVD
Epilepsy	20502679	CNVD
Breast cancer	20409316	CNVD
Acute myeloid leukemia	19651601	CNVD
head and neck squamous cell carcinoma	19451471	CNVD
Renal cell carcinoma	18765545	CNVD
Basal cell lymphoma	17170743	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Breast cancer	21611746	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90103800-90113200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:90104000-90105000	Enhancers	HUVEC	blood vessel
3	chr8:90106400-90106600	ZNF genes & repeats	Pancreas	Pancrea
4	chr8:90110600-90111000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:90110600-90111600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:90110800-90111000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:90110800-90113400	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links