Variant report

Variant	nsv4046
Chromosome Location	chr3:145693249-145880189
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2064)
CpG islands
(count:1648)
Chromatin interactive
region (count:109)
LncRNA
region (count:13)
Mature miRNA
region (count: 0)
miRNA target
sites (count:6)

(count:2064 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:145852205-145852509	HepG2	liver:	n/a	n/a
2	ARID3A	chr3:145783267-145783592	K562	blood:	n/a	n/a
3	ARID3A	chr3:145871872-145872857	HepG2	liver:	n/a	chr3:145872347-145872363
4	ARID3A	chr3:145866291-145866894	HepG2	liver:	n/a	n/a
5	ARID3A	chr3:145878807-145879683	HepG2	liver:	n/a	n/a
6	ARID3A	chr3:145809148-145809722	HepG2	liver:	n/a	n/a
7	ARID3A	chr3:145878060-145878370	HepG2	liver:	n/a	n/a
8	ARID3A	chr3:145843768-145844101	HepG2	liver:	n/a	n/a
9	ARID3A	chr3:145783331-145783735	HepG2	liver:	n/a	n/a
10	ARID3A	chr3:145833363-145834301	HepG2	liver:	n/a	n/a
11	ATF3	chr3:145878768-145879437	A549	lung:	n/a	chr3:145879029-145879038 chr3:145879022-145879031
12	BACH1	chr3:145877746-145879300	H1-hESC	embryonic stem cell:	n/a	n/a
13	BACH1	chr3:145860505-145860803	H1-hESC	embryonic stem cell:	n/a	n/a
14	BCL3	chr3:145795862-145796117	GM12878	blood:	n/a	n/a
15	BCL3	chr3:145879045-145879892	A549	lung:	n/a	chr3:145879065-145879078 chr3:145879062-145879075 chr3:145879564-145879573 chr3:145879061-145879074 chr3:145879061-145879070
16	BCL3	chr3:145877875-145879857	A549	lung:	n/a	chr3:145878879-145878892 chr3:145878816-145878829 chr3:145878912-145878925 chr3:145879065-145879078 chr3:145879062-145879075 chr3:145878817-145878830 chr3:145879564-145879573 chr3:145879061-145879074 chr3:145879061-145879070 chr3:145878616-145878629
17	BCL3	chr3:145784498-145785473	A549	lung:	n/a	n/a
18	BHLHE40	chr3:145720051-145720159	A549	lung:	n/a	n/a
19	BHLHE40	chr3:145878763-145879434	HepG2	liver:	n/a	chr3:145879070-145879086 chr3:145879064-145879080 chr3:145878903-145878919 chr3:145878975-145878991 chr3:145878968-145878984
20	BRCA1	chr3:145878644-145879148	H1-hESC	embryonic stem cell:	n/a	chr3:145878834-145878843
21	BRCA1	chr3:145877526-145879027	Hela-S3	cervix:	n/a	chr3:145878834-145878843
22	BRCA1	chr3:145878647-145879379	HepG2	liver:	n/a	chr3:145878834-145878843
23	BRCA1	chr3:145789570-145789603	Hela-S3	cervix:	n/a	n/a
24	BRCA1	chr3:145822875-145822927	Hela-S3	cervix:	n/a	n/a
25	BRCA1	chr3:145724499-145724650	Hela-S3	cervix:	n/a	n/a
26	BRCA1	chr3:145821795-145821945	Hela-S3	cervix:	n/a	n/a
27	CBX3	chr3:145831680-145831861	K562	blood:	n/a	n/a
28	CBX3	chr3:145831646-145831968	K562	blood:	n/a	n/a
29	CCNT2	chr3:145878882-145879094	K562	blood:	n/a	n/a
30	CEBPB	chr3:145768521-145768781	ECC-1	luminal epithelium:	n/a	n/a
31	CEBPB	chr3:145854499-145854831	HepG2	liver:	n/a	chr3:145854701-145854712 chr3:145854662-145854673
32	CEBPB	chr3:145866542-145866697	HepG2	liver:	n/a	n/a
33	CEBPB	chr3:145843719-145844048	HCT-116	colon:	n/a	chr3:145843831-145843842
34	CEBPB	chr3:145753214-145753503	Hela-S3	cervix:	n/a	chr3:145753339-145753350
35	CEBPB	chr3:145833458-145833815	HepG2	liver:	n/a	n/a
36	CEBPB	chr3:145789503-145789784	HepG2	liver:	n/a	chr3:145789595-145789607 chr3:145789682-145789693
37	CEBPB	chr3:145866348-145866756	MCF-7	breast:	n/a	n/a
38	CEBPB	chr3:145866252-145866823	A549	lung:	n/a	n/a
39	CEBPB	chr3:145768456-145768779	Hela-S3	cervix:	n/a	n/a
40	CEBPB	chr3:145783534-145783626	H1-hESC	embryonic stem cell:	n/a	n/a
41	CEBPB	chr3:145714293-145714614	HepG2	liver:	n/a	chr3:145714458-145714469
42	CEBPB	chr3:145843655-145844128	IMR90	lung:	n/a	chr3:145843831-145843842
43	CEBPB	chr3:145769892-145770569	Hela-S3	cervix:	n/a	n/a
44	CEBPB	chr3:145866356-145866830	HepG2	liver:	n/a	n/a
45	CEBPB	chr3:145768436-145768800	IMR90	lung:	n/a	n/a
46	CEBPB	chr3:145784415-145785149	IMR90	lung:	n/a	chr3:145784664-145784677 chr3:145784665-145784676 chr3:145784664-145784675 chr3:145784664-145784675 chr3:145784664-145784677
47	CEBPB	chr3:145768450-145768756	H1-hESC	embryonic stem cell:	n/a	n/a
48	CEBPB	chr3:145801100-145801361	MCF-7	breast:	n/a	n/a
49	CEBPB	chr3:145783351-145783646	A549	lung:	n/a	n/a
50	CEBPB	chr3:145833442-145833978	HepG2	liver:	n/a	n/a

(count:1648 , 50 per page) page: 1 2 3 4 5 6 7 ... 33

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:145879430-145879480	Jurkat	blood:	n/a
2	chr3:145879430-145879480	Jurkat	blood:	n/a
3	chr3:145736022-145736072	Caco-2	colon:	n/a
4	chr3:145878177-145878227	GM12892	blood:	n/a
5	chr3:145879686-145879736	LNCaP	prostate:	n/a
6	chr3:145736001-145736051	A549	lung:	n/a
7	chr3:145734577-145734627	AG09309	skin:	n/a
8	chr3:145736001-145736051	MCF10A-Er-Src	breast:	n/a
9	chr3:145736022-145736072	AG10803	skin:	n/a
10	chr3:145879686-145879736	NT2-D1	testis:	n/a
11	chr3:145878431-145878481	SK-N-MC	brain:	n/a
12	chr3:145879430-145879480	BJ	skin:	n/a
13	chr3:145879642-145879692	H1-hESC	embryonic stem cell:	embryo
14	chr3:145735965-145736015	GM12878	blood:	n/a
15	chr3:145736001-145736051	HRE	kidney:	n/a
16	chr3:145878539-145878589	NB4	blood:	n/a
17	chr3:145809092-145809142	NH-A	brain:	n/a
18	chr3:145875907-145875957	LNCaP	prostate:	n/a
19	chr3:145735965-145736015	HEEpiC	esophagus:	n/a
20	chr3:145735965-145736015	HIPEpiC	eye:	n/a
21	chr3:145878539-145878589	K562	blood:	n/a
22	chr3:145878979-145879029	ECC-1	luminal epithelium:	n/a
23	chr3:145878539-145878589	GM12892	blood:	n/a
24	chr3:145879686-145879736	AG09319	gingival:	n/a
25	chr3:145809092-145809142	SKMC	muscle:	n/a
26	chr3:145736022-145736072	HL-60	blood:	n/a
27	chr3:145768808-145768858	Caco-2	colon:	n/a
28	chr3:145878963-145879013	HCT-116	colon:	n/a
29	chr3:145734577-145734627	HEEpiC	esophagus:	n/a
30	chr3:145736001-145736051	SK-N-SH	brain:	n/a
31	chr3:145809092-145809142	ovcar-3	ovarian:	n/a
32	chr3:145871392-145871442	Hepatocyte	liver:	n/a
33	chr3:145858384-145858434	SK-N-MC	brain:	n/a
34	chr3:145879626-145879676	Jurkat	blood:	n/a
35	chr3:145879710-145879760	IMR90	lung:	fetal
36	chr3:145879626-145879676	BJ	skin:	n/a
37	chr3:145879277-145879327	HRPEpiC	eye:	n/a
38	chr3:145879642-145879692	GM19239	blood:	n/a
39	chr3:145879710-145879760	SKMC	muscle:	n/a
40	chr3:145736022-145736072	MCF10A-Er-Src	breast:	n/a
41	chr3:145790097-145790147	HepG2	liver:	n/a
42	chr3:145879710-145879760	GM06990	blood:	n/a
43	chr3:145878979-145879029	GM19239	blood:	n/a
44	chr3:145734655-145734705	T-47D	breast:	n/a
45	chr3:145734577-145734627	HPAEpiC	pulmonary alveolar:	n/a
46	chr3:145879710-145879760	MCF-7	breast:	n/a
47	chr3:145878431-145878481	T-47D	breast:	n/a
48	chr3:145879568-145879618	IMR90	lung:	fetal
49	chr3:145871392-145871442	ECC-1	luminal epithelium:	n/a
50	chr3:145879626-145879676	CMK	blood:	n/a

(count:109 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr3:145769730..145771973-chr3:145775961..145777837,2	MCF-7	breast:
2	chr3:145833525..145834065-chr3:145843449..145844000,2	MCF-7	breast:
3	chr3:145743585..145744532-chr3:145904873..145905604,2	MCF-7	breast:
4	chr3:145851729..145854083-chr3:145855117..145857839,4	MCF-7	breast:
5	chr3:145804487..145808112-chr3:145810682..145813494,3	MCF-7	breast:
6	chr3:145863564..145865449-chr3:145867210..145869807,2	MCF-7	breast:
7	chr3:145870477..145872332-chr3:145872492..145874567,2	MCF-7	breast:
8	chr3:145809706..145813373-chr3:145877406..145880433,4	MCF-7	breast:
9	chr3:145847747..145850479-chr3:145851136..145852882,2	MCF-7	breast:
10	chr3:145769730..145771973-chr3:145775961..145777837,2	MCF-7	breast:
11	chr3:63896385..63899379-chr3:145877518..145879661,2	MCF-7	breast:
12	chr3:145795852..145797776-chr3:145810151..145811741,2	K562	blood:
13	chr3:145786382..145788003-chr3:145848054..145850516,2	MCF-7	breast:
14	chr3:145831639..145836013-chr3:145876068..145880595,7	MCF-7	breast:
15	chr3:145847747..145850479-chr3:145851136..145852882,2	MCF-7	breast:
16	chr3:145783014..145783624-chr3:145865958..145866776,2	MCF-7	breast:
17	chr17:66031764..66032335-chr3:145878797..145879348,2	Hela-S3	cervix:
18	chr3:145845645..145847745-chr3:145881279..145883375,2	MCF-7	breast:
19	chr3:145779679..145784840-chr3:145877412..145880527,5	MCF-7	breast:
20	chr3:145829569..145840903-chr3:145873254..145880972,31	MCF-7	breast:
21	chr3:145787365..145792721-chr3:145875341..145880381,7	MCF-7	breast:
22	chr3:145872676..145874418-chr3:145880885..145882915,2	MCF-7	breast:
23	chr3:145848518..145850304-chr3:145857520..145859905,2	MCF-7	breast:
24	chr3:145735893..145737457-chr3:145739302..145741925,2	MCF-7	breast:
25	chr3:145870477..145872332-chr3:145872492..145874567,2	MCF-7	breast:
26	chr3:145768192..145769919-chr3:145878276..145881106,2	MCF-7	breast:
27	chr3:145795863..145799081-chr3:145877263..145880316,3	MCF-7	breast:
28	chr3:145832668..145836066-chr3:145839232..145841565,3	MCF-7	breast:
29	chr3:145736816..145738594-chr3:145881561..145884475,2	MCF-7	breast:
30	chr3:145865509..145867074-chr3:145870719..145872599,2	K562	blood:
31	chr3:145783644..145786560-chr3:145833867..145835451,2	MCF-7	breast:
32	chr3:145783076..145784215-chr3:145904959..145906020,4	MCF-7	breast:
33	chr3:145764658..145766757-chr3:145767513..145769613,2	K562	blood:
34	chr3:145863564..145865449-chr3:145867210..145869807,2	MCF-7	breast:
35	chr3:145856481..145858828-chr3:145868804..145871513,3	MCF-7	breast:
36	chr3:145856481..145858828-chr3:145868804..145871513,3	MCF-7	breast:
37	chr3:145877632..145880246-chrX:55477813..55479806,2	MCF-7	breast:
38	chr3:145835695..145838592-chr3:145842329..145844265,2	MCF-7	breast:
39	chr3:145827231..145829147-chr3:145878114..145880018,2	MCF-7	breast:
40	chr3:145783038..145783586-chr3:146044661..146045578,2	MCF-7	breast:
41	chr3:145787365..145792721-chr3:145875341..145880381,7	MCF-7	breast:
42	chr3:145738494..145739375-chr3:145904889..145905776,3	MCF-7	breast:
43	chr3:145808540..145810799-chr3:145816596..145819414,2	MCF-7	breast:
44	chr3:145783270..145783989-chr3:145904824..145905816,4	MCF-7	breast:
45	chr3:145848518..145850304-chr3:145857520..145859905,2	MCF-7	breast:
46	chr3:145832179..145836696-chr3:145881447..145885871,6	MCF-7	breast:
47	chr3:145819556..145824408-chr3:145825849..145828748,4	MCF-7	breast:
48	chr3:145783058..145783996-chr3:145865459..145867166,7	MCF-7	breast:
49	chr3:145851729..145854083-chr3:145855117..145857839,4	MCF-7	breast:
50	chr3:145779537..145781361-chr3:145905477..145907451,2	MCF-7	breast:

(count:13 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC107021.1-1	chr3:145782674-145782909	ENSG00000243415.2
2	lnc-AC107021.1-5	chr3:145773594-145781545	NONHSAT092545
3	lnc-AC107021.1-1	chr3:145782674-145782813	ENSG00000243415.2
4	lnc-AC107021.1-1	chr3:145785901-145785965	ENSG00000243415.2
5	lnc-AC107021.1-1	chr3:145822774-145822991	ENSG00000243415.2
6	lnc-AC107021.1-1	chr3:145781906-145782037	ENSG00000243415.2
7	lnc-PLOD2-1	chr3:145784131-145784472	ENSG00000240032.1
8	lnc-PLOD2-4	chr3:145767418-145770803	NONHSAT092544
9	lnc-AC107021.1-1	chr3:145785901-145786044	ENSG00000243415.2
10	lnc-PLOD2-2	chr3:145777372-145779466	ENSG00000261051.1
11	lnc-PLOD2-1	chr3:145786606-145786972	ENSG00000240032.1
12	lnc-AC107021.1-1	chr3:145781829-145782037	ENSG00000243415.2
13	lnc-AC107021.1-1	chr3:145782680-145782813	ENSG00000243415.2

No data

(count:6 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	PLOD2	hsa-miR-26b-5p	chr3:145787598-145787591
2	PLOD2	hsa-miR-221-3p	chr3:145787340-145787362
3	PLOD2	hsa-miR-26b-5p	chr3:145787315-145787309
4	PLOD2	hsa-miR-26b-5p	chr3:145787592-145787612
5	PLOD2	hsa-miR-183-5p	chr3:145787284-145787309
6	PLOD2	hsa-miR-26b-5p	chr3:145787310-145787330

Variant related genes	Relation type
ENSG00000261051	TF binding region
ENSG00000232013	TF binding region
ENSG00000240032	TF binding region
ENSG00000243415	TF binding region
PLOD2	TF binding region
ENSG00000261051	CpG island
ENSG00000232013	CpG island
ENSG00000240032	CpG island
ENSG00000243415	CpG island
PLOD2	CpG island
ENSG00000163635	chromatin interactions
ENSG00000255236	chromatin interactions
ENSG00000114698	chromatin interactions
ENSG00000232013	chromatin interactions
ENSG00000112715	chromatin interactions
ENSG00000163932	chromatin interactions
ENSG00000240032	chromatin interactions
ENSG00000187601	chromatin interactions
ENSG00000266328	chromatin interactions
ENSG00000152952	chromatin interactions
ENSG00000182481	chromatin interactions
ENSG00000124225	chromatin interactions
ENSG00000243415	chromatin interactions

Extended variants
information (count: 7317 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:7317 , 50 per page) page: 1 2 3 4 5 6 7 ... 147

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs572480748	chr3:145693273-145693274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs539860115	chr3:145693296-145693297	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs564575536	chr3:145693319-145693320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs578172574	chr3:145693328-145693329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs189195409	chr3:145693345-145693346	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs563721075	chr3:145693422-145693423	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs531137064	chr3:145693454-145693455	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs549470113	chr3:145693455-145693456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs561382917	chr3:145693471-145693472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs181178901	chr3:145693480-145693481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs577775997	chr3:145693496-145693497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs545145011	chr3:145693499-145693500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs67670485	chr3:145693502-145693503	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs538544573	chr3:145693503-145693504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs35527115	chr3:145693504-145693505	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs377543928	chr3:145693506-145693507	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs115620243	chr3:145693526-145693527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs568916443	chr3:145693528-145693529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs528440030	chr3:145693555-145693556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs554212534	chr3:145693584-145693585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs146698204	chr3:145693595-145693596	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs561021449	chr3:145693633-145693634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs533670948	chr3:145693722-145693723	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs558127904	chr3:145693741-145693742	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs576813580	chr3:145693785-145693786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs75923716	chr3:145693854-145693855	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs557656418	chr3:145693939-145693940	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs367741314	chr3:145693943-145693944	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs145476374	chr3:145693944-145693945	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs371567693	chr3:145693965-145693966	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs111873629	chr3:145693975-145693976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs71300361	chr3:145694081-145694082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs561493774	chr3:145694181-145694182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs528592028	chr3:145694270-145694271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs185875451	chr3:145694300-145694301	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs571594691	chr3:145694315-145694316	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs565089925	chr3:145694343-145694344	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs62272613	chr3:145694353-145694354	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs550575960	chr3:145694358-145694359	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs138022867	chr3:145694393-145694394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs533625807	chr3:145694400-145694401	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs149547138	chr3:145694408-145694409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs189805695	chr3:145694512-145694513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs376906198	chr3:145694513-145694514	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs143183406	chr3:145694520-145694521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs565721142	chr3:145694580-145694581	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs182381671	chr3:145694615-145694616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs148260458	chr3:145694616-145694617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs564761560	chr3:145694644-145694645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs570324421	chr3:145694672-145694673	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	21115979	CNVD
Colorectal cancer	18645599	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Hepatocellular carcinoma	16750200	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
Blepharophimosis-ptosis-epicanthus inversus syndrome	22067867	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
abnormal development	18461090	CNVD
Breast cancer	21364760	CNVD
Mental retardation	17847001	CNVD
Basal cell lymphoma	17170743	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Autism	18923514	CNVD
Autism	22241247	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Autism	21956041	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Breast cancer	16608533	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	21509527	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:2544 , 50 per page) page: 1 2 3 4 5 6 7 ... 51

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145686400-145698200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:145695600-145738200	Weak transcription	HSMM	muscle
3	chr3:145696400-145702200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:145697200-145697400	ZNF genes & repeats	Aorta	Aorta
5	chr3:145697400-145701000	Weak transcription	Aorta	Aorta
6	chr3:145698200-145701400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:145698400-145698600	Enhancers	HSMMtube	muscle
8	chr3:145699200-145699400	Enhancers	HSMMtube	muscle
9	chr3:145701000-145701400	ZNF genes & repeats	Aorta	Aorta
10	chr3:145701400-145706400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:145722800-145723000	Bivalent Enhancer	Pancreas	Pancrea
12	chr3:145734000-145736000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:145734800-145747800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:145736000-145739400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:145736800-145737400	Enhancers	Gastric	stomach
16	chr3:145737200-145737400	ZNF genes & repeats	Aorta	Aorta
17	chr3:145737400-145740800	Weak transcription	Aorta	Aorta
18	chr3:145737400-145749400	Weak transcription	Osteobl	bone
19	chr3:145738200-145738600	Strong transcription	HSMM	muscle
20	chr3:145738600-145739400	Weak transcription	HSMM	muscle
21	chr3:145739400-145740200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:145739400-145740600	Strong transcription	HSMM	muscle
23	chr3:145739400-145768600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr3:145740200-145741600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:145740600-145752000	Weak transcription	HSMM	muscle
26	chr3:145741600-145747600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:145747400-145750600	Weak transcription	HUVEC	blood vessel
28	chr3:145747600-145748000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr3:145747600-145748400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:145747800-145748400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:145748400-145748600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:145748400-145752600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr3:145748600-145752400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:145749400-145752600	Strong transcription	Osteobl	bone
35	chr3:145750400-145751000	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr3:145750400-145751000	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr3:145750400-145751000	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr3:145750400-145751400	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr3:145751400-145753400	Enhancers	Fetal Lung	lung
40	chr3:145751800-145752400	ZNF genes & repeats	Aorta	Aorta
41	chr3:145752000-145752600	Strong transcription	HSMM	muscle
42	chr3:145752200-145752400	Enhancers	Fetal Kidney	kidney
43	chr3:145752200-145752600	Enhancers	Fetal Stomach	stomach
44	chr3:145752400-145753200	Enhancers	Stomach Smooth Muscle	stomach
45	chr3:145752400-145754800	Weak transcription	Aorta	Aorta
46	chr3:145752400-145768200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr3:145752600-145767600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr3:145752600-145775800	Weak transcription	Osteobl	bone
49	chr3:145752600-145776000	Weak transcription	HSMM	muscle
50	chr3:145753400-145753600	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links