The 2.0 version of rSNPBase

Variant report

Variant nsv413854
Chromosome Location chr9:116289917-116289917
allele n/a
Outlinks Ensembl   UCSC
Chromatin state (count:88 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:116264000-116291200 Weak transcription H9 Cell Line embryonic stem cell
2 chr9:116264800-116298400 Weak transcription Brain Germinal Matrix brain
3 chr9:116269400-116303000 Weak transcription iPS-20b Cell Line embryonic stem cell
4 chr9:116269600-116298400 Weak transcription H1 Cell Line embryonic stem cell
5 chr9:116270400-116290600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
6 chr9:116277200-116298600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr9:116277600-116298600 Weak transcription Fetal Brain Female brain
8 chr9:116282800-116295600 Strong transcription HepG2 liver
9 chr9:116284400-116290600 Enhancers Fetal Lung lung
10 chr9:116284600-116290200 Genic enhancers Fetal Adrenal Gland Adrenal Gland
11 chr9:116284600-116290800 Genic enhancers Fetal Stomach stomach
12 chr9:116284800-116290400 Enhancers Fetal Heart heart
13 chr9:116285200-116290600 Enhancers Brain Dorsolateral Prefrontal Cortex brain
14 chr9:116285800-116290400 Weak transcription A549 lung
15 chr9:116286200-116290400 Enhancers Brain Hippocampus Middle brain
16 chr9:116286200-116291000 Enhancers Stomach Mucosa stomach
17 chr9:116286400-116290000 Enhancers Duodenum Smooth Muscle Duodenum
18 chr9:116286400-116290600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
19 chr9:116286800-116290600 Enhancers Rectal Smooth Muscle rectum
20 chr9:116286800-116293000 Genic enhancers Primary T cells fromperipheralblood blood
21 chr9:116287000-116290800 Genic enhancers Duodenum Mucosa Duodenum
22 chr9:116287000-116311600 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
23 chr9:116287200-116290200 Enhancers Brain Angular Gyrus brain
24 chr9:116287200-116290800 Enhancers Placenta Placenta
25 chr9:116287400-116290400 Weak transcription Gastric stomach
26 chr9:116287400-116290600 Enhancers Brain Anterior Caudate brain
27 chr9:116287400-116290800 Weak transcription Primary hematopoietic stem cells short term culture blood
28 chr9:116287400-116291600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr9:116287400-116306600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
30 chr9:116287400-116309200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
31 chr9:116287600-116290600 Enhancers Brain Cingulate Gyrus brain
32 chr9:116287600-116291600 Strong transcription Primary hematopoietic stem cells blood
33 chr9:116287600-116296800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr9:116287600-116302800 Strong transcription Fetal Intestine Large intestine
35 chr9:116287800-116291200 Weak transcription Liver Liver
36 chr9:116288000-116290000 Genic enhancers Rectal Mucosa Donor 29 rectum
37 chr9:116288000-116290600 Enhancers Ovary ovary
38 chr9:116288000-116299200 Weak transcription Dnd41 blood
39 chr9:116288000-116308600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
40 chr9:116288200-116290200 Enhancers Right Ventricle heart
41 chr9:116288200-116290400 Enhancers Brain Inferior Temporal Lobe brain
42 chr9:116288200-116290800 Weak transcription Thymus Thymus
43 chr9:116288200-116291400 Genic enhancers Colonic Mucosa Colon
44 chr9:116288400-116290000 Enhancers Brain Substantia Nigra brain
45 chr9:116288400-116290000 Weak transcription Psoas Muscle Psoas
46 chr9:116288400-116290400 Enhancers Colon Smooth Muscle Colon
47 chr9:116288400-116292600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
48 chr9:116288400-116295400 Strong transcription Primary T helper 17 cells PMA-I stimulated --
49 chr9:116288400-116296400 Weak transcription Small Intestine intestine
50 chr9:116288600-116290000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015