Variant report

Variant	nsv415427
Chromosome Location	chr9:24492759-24494792
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 144 )

Variant overlapped rSNPs/rCNVs (count:106 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs80149690	chr9:24492759-24492760	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs79346031	chr9:24492764-24492765	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs79544410	chr9:24492767-24492768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs80063076	chr9:24492768-24492769	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs79508326	chr9:24492770-24492771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs78282137	chr9:24492773-24492774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs12336039	chr9:24492778-24492779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs78810447	chr9:24492791-24492792	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs78902839	chr9:24492792-24492793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs113036718	chr9:24492794-24492795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs557021851	chr9:24492801-24492802	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs75760582	chr9:24492805-24492806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs79353854	chr9:24492809-24492810	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs76451150	chr9:24492814-24492815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs79355983	chr9:24492815-24492816	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs113251244	chr9:24492816-24492817	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs79862406	chr9:24492822-24492823	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs368152961	chr9:24492846-24492847	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs185557186	chr9:24492872-24492873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs144414193	chr9:24492877-24492878	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs189917689	chr9:24492878-24492879	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs377304062	chr9:24492889-24492890	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs374043641	chr9:24492890-24492891	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs561763187	chr9:24492904-24492905	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs182606527	chr9:24492920-24492921	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs113412007	chr9:24492922-24492923	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs147813745	chr9:24492925-24492926	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs550723530	chr9:24492928-24492929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs570534565	chr9:24492929-24492930	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs187857664	chr9:24492960-24492961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs28614176	chr9:24492975-24492976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs552764560	chr9:24492976-24492977	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs148907488	chr9:24493000-24493001	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs535378590	chr9:24493056-24493057	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs568151714	chr9:24493103-24493104	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs201138356	chr9:24493110-24493111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs369929207	chr9:24493121-24493122	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs375576339	chr9:24493125-24493126	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs568798361	chr9:24493133-24493134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs149826077	chr9:24493140-24493141	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs2891221	chr9:24493148-24493149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs535501622	chr9:24493184-24493185	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs568479462	chr9:24493201-24493202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs537016180	chr9:24493246-24493247	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs372972322	chr9:24493269-24493270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs557048283	chr9:24493276-24493277	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs143590843	chr9:24493297-24493298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs545594729	chr9:24493317-24493318	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs80250365	chr9:24493355-24493356	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs370961193	chr9:24493356-24493357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:144)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Myelofibrosis	22110671	CNVD
Ewing''s sarcoma	22429812	CNVD
Neuroblastoma	21899760	CNVD
Glioblastoma multiforme	19435819	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Lung cancer	21911935	CNVD
Primary central nervous system lymphoma	21088137	CNVD
head and neck squamous cell carcinoma	21798897	CNVD
Cancer	21253487	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Glioblastoma multiforme	21922591	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Urothelial cell carcinoma	18451213	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Leukemia	19602459	CNVD
Acute monocytic leukemia	16498392	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Leukemia	18688285	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Melanoma	17363583	CNVD
Glioblastoma multiforme	19115005	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Esophageal adenocarcinoma	18519675	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:24487800-24496000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr9:24489400-24496000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:24490200-24495200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr9:24490200-24495400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:24490200-24496400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:24490400-24495000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr9:24490400-24495800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:24490600-24495800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:24494600-24495600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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