Variant report
| Variant | nsv415863 |
|---|---|
| Chromosome Location | chr9:101347986-101348316 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:101340573..101343071-chr9:101347948..101351619,3 | MCF-7 | breast: | |
| 2 | chr9:101337939..101341594-chr9:101346528..101349148,3 | K562 | blood: | |
| 3 | chr9:101348020..101348980-chr9:101537926..101538570,2 | MCF-7 | breast: | |
| 4 | chr9:101334595..101337716-chr9:101344699..101348746,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs368149116 | chr9:101347986-101347987 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs143355752 | chr9:101348072-101348073 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs550029959 | chr9:101348095-101348096 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs570166428 | chr9:101348223-101348224 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs189719070 | chr9:101348228-101348229 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs552850133 | chr9:101348244-101348245 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs192754490 | chr9:101348271-101348272 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs566230277 | chr9:101348294-101348295 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs535343204 | chr9:101348300-101348301 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs555265361 | chr9:101348304-101348305 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs372573065 | chr9:101348312-101348313 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs375661064 | chr9:101348315-101348316 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs369321071 | chr9:101348316-101348317 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:73)
| Disease | PMID | Source |
|---|---|---|
| Chordoma | 18071362 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Chordoma | 21602918 | CNVD |
| Renal cell carcinoma | 18592004 | CNVD |
| Developmental delay | 19490664 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| microdeletion syndrome | 16199537 | CNVD |
| Ovarian cancer | 21720365 | CNVD |
| Non-syndromic sensorineural hearing loss | 21030649 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Cancer | 20164919 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Renal cell carcinoma | 21668985 | CNVD |
| Autism | 22495311 | CNVD |
| Melanoma | 18172304 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Cancer | 16751803 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Leukemia | 17361228 | CNVD |
| Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
| Glioblastoma | 16823260 | CNVD |
| Leukemia | 18688285 | CNVD |
| Non-small cell lung cancer | 21044232 | CNVD |
| Brain cancer | 20823417 | CNVD |
| Acute lymphoblastic leukemia | 21390130 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Renal cell carcinoma | 19461508 | CNVD |
| Neuroblastoma | 18923191 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Heart disease | 21282601 | CNVD |
| Acute promyelocytic leukemia | 19109227 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Acute myeloid leukemia | 21251322 | CNVD |
| Gastrointestinal stromal cancer | 16982739 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Bipolar disorder | 18458673 | CNVD |
| Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
| T-cell acute lymphoblastic leukemia | 18185524 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
| Gastrointestinal stromal cancer | 20877625 | CNVD |
| Malignant fibrous histiocytomas | 21085701 | CNVD |
| Biliary cancer | 19435499 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Intracranial aneurysm | 16715129 | CNVD |
| Cardiac fibroma | 18329553 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Basal cell nevus syndrome | 21572526 | CNVD |
| Mental retardation | 19951919 | CNVD |
| Retinoblastoma | 22278416 | CNVD |
| 9q22.3 microdeletion syndrome | 22283845 | CNVD |
| Acute lymphoblastic leukemia | 21980252 | CNVD |
| Acute lymphoblastic leukemia | 21339820 | CNVD |
| overgrowth syndrome | 16570072 | CNVD |
| Neurodevelopmental disorder | 22521361 | CNVD |
| Nicotine dependence | 17160897 | CNVD |
| Mantle cell lymphoma | 19029149 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:101332800-101355600 | Weak transcription | Brain Inferior Temporal Lobe | brain |
| 2 | chr9:101347200-101358800 | Weak transcription | Fetal Brain Female | brain |
| 3 | chr9:101347400-101351200 | Weak transcription | Fetal Brain Male | brain |
