Variant report

Variant	nsv415961
Chromosome Location	chr9:140816611-140816780
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 19 )

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs182309208	chr9:140816611-140816612	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs115497039	chr9:140816618-140816619	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs572311645	chr9:140816620-140816621	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs112982211	chr9:140816621-140816622	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs531719607	chr9:140816626-140816627	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs577696917	chr9:140816627-140816628	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs34313140	chr9:140816648-140816649	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs543535755	chr9:140816667-140816668	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs562314014	chr9:140816673-140816674	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs531548456	chr9:140816687-140816688	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs376261370	chr9:140816706-140816707	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs562017780	chr9:140816733-140816734	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs527636342	chr9:140816735-140816736	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs7043116	chr9:140816767-140816768	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:19)

Disease	PMID	Source
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Cardiac fibroma	18329553	CNVD
Lung cancer	19147751	CNVD
Cervical cancer	17311676	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Chordoma	18071362	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Sudden cardiac death	19188705	CNVD
Myoepithelioma	18604193	CNVD
Tuberous sclerosis	19566914	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Mantle cell lymphoma	19029149	CNVD

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140795000-140818200	Weak transcription	Fetal Brain Male	brain
2	chr9:140806400-140817200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr9:140806800-140818800	Strong transcription	Fetal Brain Female	brain
4	chr9:140807600-140829600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:140807800-140819400	Weak transcription	Spleen	Spleen
6	chr9:140808200-140821000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr9:140812800-140817400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:140813200-140816800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:140813400-140818400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr9:140813800-140818400	Weak transcription	Right Atrium	heart
11	chr9:140814000-140818600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr9:140814000-140821000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr9:140814600-140817200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr9:140814600-140819000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:140815200-140817200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr9:140815200-140843200	Weak transcription	Brain Angular Gyrus	brain
17	chr9:140816600-140817000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:140816600-140817200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
19	chr9:140816600-140817400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
20	chr9:140816600-140818400	ZNF genes & repeats	Brain Germinal Matrix	brain

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