Variant report

Variant	nsv4279
Chromosome Location	chr4:27056372-27101774
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:27)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:27064506..27067501-chr4:27079100..27081576,2	MCF-7	breast:
2	chr4:27089607..27092447-chr4:27116459..27118103,2	MCF-7	breast:
3	chr4:27058959..27060744-chr4:27062018..27064051,2	MCF-7	breast:
4	chr4:27098137..27101120-chr4:27101208..27104613,3	MCF-7	breast:
5	chr4:27098137..27101120-chr4:27101208..27104613,3	MCF-7	breast:
6	chr4:27093420..27095634-chr4:27097960..27100071,2	K562	blood:
7	chr4:27098348..27100200-chr4:27101812..27104564,2	MCF-7	breast:
8	chr4:27049831..27050640-chr4:27086186..27086987,2	MCF-7	breast:
9	chr4:27053823..27056500-chr4:27057897..27059564,2	K562	blood:
10	chr4:27049630..27050564-chr4:27086025..27086924,3	K562	blood:
11	chr4:27078619..27080860-chr4:27081830..27086225,4	MCF-7	breast:
12	chr4:27080386..27082606-chr4:27086852..27089435,2	K562	blood:
13	chr4:27078619..27080860-chr4:27081830..27086225,4	MCF-7	breast:
14	chr4:27066736..27069432-chr4:27307090..27308981,2	MCF-7	breast:
15	chr4:27048431..27052730-chr4:27053495..27057145,5	K562	blood:
16	chr4:26439953..26442346-chr4:27061840..27063686,2	K562	blood:
17	chr4:27052472..27054140-chr4:27095815..27098654,2	MCF-7	breast:
18	chr4:27093420..27095634-chr4:27097960..27100071,2	K562	blood:
19	chr4:27053823..27056500-chr4:27057897..27059564,2	K562	blood:
20	chr4:27064506..27067501-chr4:27079100..27081576,2	MCF-7	breast:
21	chr4:27080386..27082606-chr4:27086852..27089435,2	K562	blood:
22	chr4:27051955..27053915-chr4:27085693..27088631,2	K562	blood:
23	chr4:27097749..27098567-chr4:27320302..27321059,2	MCF-7	breast:
24	chr4:27101473..27103133-chr4:27171818..27174588,2	MCF-7	breast:
25	chr4:27058959..27060744-chr4:27062018..27064051,2	MCF-7	breast:
26	chr4:27052031..27054085-chr4:27099208..27101955,2	MCF-7	breast:
27	chr4:27051663..27053703-chr4:27087904..27090064,2	MCF-7	breast:

No data

Extended variants
information (count: 1652 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:1652 , 50 per page) page: 1 2 3 4 5 6 7 ... 34

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs539895701	chr4:27056403-27056404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs550550026	chr4:27056412-27056413	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs79246977	chr4:27056418-27056419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs542243977	chr4:27056419-27056420	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs545164424	chr4:27056461-27056462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs146052546	chr4:27056529-27056530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs574661971	chr4:27056530-27056531	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs564978328	chr4:27056533-27056534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs540073182	chr4:27056535-27056536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs372969336	chr4:27056545-27056546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs78255049	chr4:27056580-27056581	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs532114812	chr4:27056599-27056600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs373230818	chr4:27056604-27056605	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs546376786	chr4:27056619-27056620	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs545533141	chr4:27056703-27056704	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs566590643	chr4:27056714-27056715	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs562239280	chr4:27056735-27056736	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs116740303	chr4:27056738-27056739	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs180814992	chr4:27056743-27056744	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs16878739	chr4:27056744-27056745	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs541544892	chr4:27056748-27056749	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs185915538	chr4:27056759-27056760	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs148963829	chr4:27056766-27056767	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs570985057	chr4:27056885-27056886	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs115187945	chr4:27056895-27056896	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs28550420	chr4:27056897-27056898	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs570145150	chr4:27056921-27056922	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs535886914	chr4:27056950-27056951	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs555701999	chr4:27056983-27056984	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs574645513	chr4:27057026-27057027	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs540477494	chr4:27057112-27057113	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs10034830	chr4:27057143-27057144	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
33	rs10012621	chr4:27057147-27057148	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs189175514	chr4:27057160-27057161	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs10002029	chr4:27057188-27057189	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs531271790	chr4:27057232-27057233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs74718454	chr4:27057264-27057265	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs10034944	chr4:27057318-27057319	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs181788821	chr4:27057326-27057327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs539847480	chr4:27057336-27057337	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs527986957	chr4:27057362-27057363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs548111230	chr4:27057401-27057402	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs143697035	chr4:27057430-27057431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs148092248	chr4:27057442-27057443	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs550383402	chr4:27057464-27057465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs570182374	chr4:27057512-27057513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs535927056	chr4:27057522-27057523	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs553174715	chr4:27057529-27057530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs555484432	chr4:27057558-27057559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs566103114	chr4:27057627-27057628	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	17533364	CNVD
Oral squamous cell carcinoma	17134496	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Cancer	21637783	CNVD
Melanoma	21693616	CNVD
Squamous cell cancer	21044232	CNVD
Colorectal cancer	20709793	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Non-small cell lung cancer	21044232	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Cervical cancer	21062161	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Neuroblastoma	18923191	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Lung cancer	18438408	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21858162	CNVD
small cell lung cancer	20016488	CNVD
Cancer	21183584	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Breast cancer	17133270	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	22183965	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Olfactory neuroblastoma	18408657	CNVD
Burkitt''s lymphoma	20823134	CNVD
Cancer	22183965	CNVD
Gastric cancer	16891809	CNVD
Myelofibrosis	22110671	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD

Chromatin state (count:527 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27051400-27062800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:27051600-27058600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:27055200-27060400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:27056600-27057200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:27056800-27057200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr4:27056800-27057200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:27057800-27058600	Enhancers	Colonic Mucosa	Colon
8	chr4:27058000-27058600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr4:27058000-27059200	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr4:27058400-27058800	Enhancers	Duodenum Mucosa	Duodenum
11	chr4:27058400-27059200	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr4:27058600-27058800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr4:27058600-27059000	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr4:27058600-27080000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr4:27059000-27059600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:27060400-27061000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:27063000-27064600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr4:27064000-27064400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr4:27067000-27071400	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr4:27067200-27067600	Enhancers	Fetal Muscle Leg	muscle
21	chr4:27067200-27067600	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr4:27067400-27067600	Bivalent Enhancer	HSMMtube	muscle
23	chr4:27067600-27068800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr4:27067600-27069000	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr4:27068200-27068600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr4:27068200-27068600	Enhancers	Lung	lung
27	chr4:27068600-27069600	Weak transcription	Lung	lung
28	chr4:27068800-27069800	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr4:27069000-27069400	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr4:27069400-27070400	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr4:27069600-27070400	Enhancers	Lung	lung
32	chr4:27069800-27070200	Bivalent Enhancer	HepG2	liver
33	chr4:27069800-27070600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr4:27070600-27071200	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr4:27077200-27077400	Enhancers	H1 Cell Line	embryonic stem cell
36	chr4:27077400-27077800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
37	chr4:27077400-27077800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr4:27077400-27077800	Active TSS	H9 Cell Line	embryonic stem cell
39	chr4:27077400-27077800	Active TSS	Placenta	Placenta
40	chr4:27077400-27078000	Active TSS	ES-I3 Cell Line	embryonic stem cell
41	chr4:27077400-27078000	Active TSS	HUES6 Cell Line	embryonic stem cell
42	chr4:27077400-27078200	Active TSS	iPS-18 Cell Line	embryonic stem cell
43	chr4:27077600-27077800	Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr4:27077600-27077800	Active TSS	HUES64 Cell Line	embryonic stem cell
45	chr4:27077600-27077800	Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr4:27077800-27078000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
47	chr4:27077800-27078000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
48	chr4:27077800-27078000	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr4:27077800-27078000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
50	chr4:27077800-27078000	Bivalent/Poised TSS	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links