Variant report
Variant | nsv428326 |
---|---|
Chromosome Location | chr16:34357763-34769642 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1748)
- CpG islands (count:4582)
- Chromatin interactive region (count:7)
- LncRNA region (count:73)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ATF1 | chr16:34643912-34644196 | K562 | blood: | n/a | n/a |
2 | ATF1 | chr16:34589373-34589390 | K562 | blood: | n/a | n/a |
3 | ATF1 | chr16:34573796-34574082 | K562 | blood: | n/a | n/a |
4 | ATF1 | chr16:34715569-34715609 | K562 | blood: | n/a | n/a |
5 | ATF1 | chr16:34625774-34626005 | K562 | blood: | n/a | n/a |
6 | ATF1 | chr16:34486728-34487212 | K562 | blood: | n/a | n/a |
7 | ATF1 | chr16:34574452-34574460 | K562 | blood: | n/a | n/a |
8 | ATF1 | chr16:34765990-34765998 | K562 | blood: | n/a | n/a |
9 | ATF1 | chr16:34768061-34768441 | K562 | blood: | n/a | n/a |
10 | BATF | chr16:34539865-34540180 | GM12878 | blood: | n/a | chr16:34540044-34540055 |
11 | BATF | chr16:34539887-34540221 | GM12878 | blood: | n/a | chr16:34540044-34540055 |
12 | BATF | chr16:34731803-34731989 | GM12878 | blood: | n/a | chr16:34731883-34731894 chr16:34731915-34731926 |
13 | BATF | chr16:34731793-34732055 | GM12878 | blood: | n/a | chr16:34731883-34731894 chr16:34731915-34731926 |
14 | BATF | chr16:34536693-34536965 | GM12878 | blood: | n/a | chr16:34536834-34536845 |
15 | BHLHE40 | chr16:34732021-34732023 | GM12878 | blood: | n/a | n/a |
16 | BHLHE40 | chr16:34647001-34647022 | GM12878 | blood: | n/a | n/a |
17 | BHLHE40 | chr16:34740335-34740524 | K562 | blood: | n/a | n/a |
18 | BHLHE40 | chr16:34741044-34741235 | K562 | blood: | n/a | n/a |
19 | BHLHE40 | chr16:34625806-34626006 | GM12878 | blood: | n/a | n/a |
20 | BHLHE40 | chr16:34429795-34429892 | K562 | blood: | n/a | chr16:34429875-34429891 |
21 | BHLHE40 | chr16:34745103-34745432 | GM12878 | blood: | n/a | chr16:34745242-34745251 |
22 | BHLHE40 | chr16:34726730-34726951 | K562 | blood: | n/a | chr16:34726896-34726912 |
23 | BHLHE40 | chr16:34598011-34598017 | K562 | blood: | n/a | n/a |
24 | BHLHE40 | chr16:34721874-34721912 | GM12878 | blood: | n/a | n/a |
25 | BHLHE40 | chr16:34625401-34626021 | K562 | blood: | n/a | n/a |
26 | BHLHE40 | chr16:34745112-34745352 | K562 | blood: | n/a | chr16:34745242-34745251 |
27 | BRCA1 | chr16:34666402-34666616 | H1-hESC | embryonic stem cell: | n/a | n/a |
28 | BRCA1 | chr16:34666658-34666728 | GM12878 | blood: | n/a | n/a |
29 | CBX3 | chr16:34625799-34625988 | K562 | blood: | n/a | n/a |
30 | CEBPB | chr16:34539085-34539474 | HepG2 | liver: | n/a | n/a |
31 | CEBPB | chr16:34598745-34598792 | K562 | blood: | n/a | n/a |
32 | CEBPB | chr16:34637648-34637812 | K562 | blood: | n/a | chr16:34637709-34637720 |
33 | CEBPB | chr16:34600051-34600514 | ECC-1 | luminal epithelium: | n/a | chr16:34600335-34600346 |
34 | CEBPB | chr16:34486734-34487193 | K562 | blood: | n/a | n/a |
35 | CEBPB | chr16:34542362-34542582 | HepG2 | liver: | n/a | n/a |
36 | CEBPB | chr16:34449667-34450116 | A549 | lung: | n/a | n/a |
37 | CEBPB | chr16:34767993-34768467 | HepG2 | liver: | n/a | n/a |
38 | CEBPB | chr16:34368818-34369342 | ECC-1 | luminal epithelium: | n/a | chr16:34369018-34369029 |
39 | CEBPB | chr16:34685080-34685431 | HepG2 | liver: | n/a | n/a |
40 | CEBPB | chr16:34599864-34600530 | HepG2 | liver: | n/a | chr16:34600335-34600346 |
41 | CEBPB | chr16:34597947-34598296 | A549 | lung: | n/a | n/a |
42 | CEBPB | chr16:34597882-34598141 | IMR90 | lung: | n/a | n/a |
43 | CEBPB | chr16:34369435-34369709 | HepG2 | liver: | n/a | chr16:34369584-34369595 |
44 | CEBPB | chr16:34536217-34536514 | HepG2 | liver: | n/a | n/a |
45 | CEBPB | chr16:34685136-34685387 | IMR90 | lung: | n/a | n/a |
46 | CEBPB | chr16:34483631-34483649 | K562 | blood: | n/a | n/a |
47 | CEBPB | chr16:34599887-34600514 | A549 | lung: | n/a | chr16:34600335-34600346 |
48 | CEBPB | chr16:34411891-34412110 | IMR90 | lung: | n/a | n/a |
49 | CEBPB | chr16:34598601-34599065 | A549 | lung: | n/a | n/a |
50 | CEBPB | chr16:34632715-34632941 | HepG2 | liver: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr16:34659664-34659714 | HNPCEpiC | eye: | n/a |
2 | chr16:34442283-34442333 | Hepatocyte | liver: | n/a |
3 | chr16:34407715-34407765 | SK-N-SH | brain: | n/a |
4 | chr16:34442373-34442423 | Hela-S3 | cervix: | n/a |
5 | chr16:34375039-34375089 | CMK | blood: | n/a |
6 | chr16:34378804-34378854 | HCPEpiC | choroid plexus: | n/a |
7 | chr16:34659664-34659714 | SK-N-SH | brain: | n/a |
8 | chr16:34659664-34659714 | HNPCEpiC | eye: | n/a |
9 | chr16:34442283-34442333 | Hepatocyte | liver: | n/a |
10 | chr16:34407715-34407765 | SK-N-SH | brain: | n/a |
11 | chr16:34442373-34442423 | Hela-S3 | cervix: | n/a |
12 | chr16:34375039-34375089 | CMK | blood: | n/a |
13 | chr16:34378804-34378854 | HCPEpiC | choroid plexus: | n/a |
14 | chr16:34659664-34659714 | SK-N-SH | brain: | n/a |
15 | chr16:34407715-34407765 | PANC-1 | pancreas: | n/a |
16 | chr16:34659664-34659714 | HL-60 | blood: | n/a |
17 | chr16:34404673-34404723 | RPTEC | kidney: | n/a |
18 | chr16:34407760-34407810 | HPAEpiC | pulmonary alveolar: | n/a |
19 | chr16:34430837-34430887 | HCM | heart: | n/a |
20 | chr16:34378497-34378547 | MCF10A-Er-Src | breast: | n/a |
21 | chr16:34408014-34408064 | GM12892 | blood: | n/a |
22 | chr16:34430382-34430432 | HRCEpiC | kidney: | n/a |
23 | chr16:34712713-34712763 | SK-N-SH_RA | brain: | n/a |
24 | chr16:34439811-34439861 | NH-A | brain: | n/a |
25 | chr16:34741304-34741354 | HEEpiC | esophagus: | n/a |
26 | chr16:34648955-34649005 | GM12878 | blood: | n/a |
27 | chr16:34741304-34741354 | SK-N-SH | brain: | n/a |
28 | chr16:34428061-34428111 | HMEC | breast: | n/a |
29 | chr16:34429930-34429980 | HRCEpiC | kidney: | n/a |
30 | chr16:34378069-34378119 | ovcar-3 | ovarian: | n/a |
31 | chr16:34741251-34741301 | ProgFib | skin: | n/a |
32 | chr16:34441787-34441837 | AoSMC | blood vessel: | n/a |
33 | chr16:34712713-34712763 | HRPEpiC | eye: | n/a |
34 | chr16:34441787-34441837 | HIPEpiC | eye: | n/a |
35 | chr16:34429930-34429980 | HIPEpiC | eye: | n/a |
36 | chr16:34443120-34443170 | HepG2 | liver: | n/a |
37 | chr16:34430905-34430955 | HCM | heart: | n/a |
38 | chr16:34375039-34375089 | HMEC | breast: | n/a |
39 | chr16:34428061-34428111 | ECC-1 | luminal epithelium: | n/a |
40 | chr16:34439811-34439861 | PrEC | prostate: | n/a |
41 | chr16:34625446-34625496 | HCT-116 | colon: | n/a |
42 | chr16:34741251-34741301 | AG09309 | skin: | n/a |
43 | chr16:34587307-34587357 | IMR90 | lung: | fetal |
44 | chr16:34430905-34430955 | HEK293 | kidney: | embryo |
45 | chr16:34404772-34404822 | HCF | heart: | n/a |
46 | chr16:34648955-34649005 | HUVEC | blood vessel: | n/a |
47 | chr16:34378497-34378547 | HRPEpiC | eye: | n/a |
48 | chr16:34741966-34742016 | HNPCEpiC | eye: | n/a |
49 | chr16:34404774-34404824 | LNCaP | prostate: | n/a |
50 | chr16:34442373-34442423 | HMEC | breast: | n/a |
(count:7 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr15:57024256..57026523-chr16:34752267..34754460,2 | MCF-7 | breast: | |
2 | chr16:34422640..34423667-chr16:34625487..34626782,3 | MCF-7 | breast: | |
3 | chr16:34422640..34423667-chr16:34625487..34626782,3 | MCF-7 | breast: | |
4 | chr16:34726782..34727382-chr16:34760283..34761051,3 | MCF-7 | breast: | |
5 | chr16:34429328..34431681-chr16:34466203..34469132,2 | K562 | blood: | |
6 | chr16:34726782..34727382-chr16:34760283..34761051,3 | MCF-7 | breast: | |
7 | chr15:56788863..56789371-chr16:34759996..34760825,2 | MCF-7 | breast: |
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-LINC00273-25 | chr16:34712988-34713065 | NONHSAT142191 |
2 | lnc-CTD-2144E22.5.1-6 | chr16:34620250-34620420 | NONHSAT142183 |
3 | lnc-CTD-2144E22.5.1-6 | chr16:34615965-34616632 | ENSG00000259841.2 |
4 | lnc-LINC00273-25 | chr16:34713636-34713735 | NONHSAT142191 |
5 | lnc-CTD-2144E22.5.1-6 | chr16:34610877-34611020 | ENSG00000259841.2 |
6 | lnc-LINC00273-27 | chr16:34740697-34740840 | NONHSAT142198 |
7 | lnc-LINC00273-25 | chr16:34713293-34713362 | NONHSAT142192 |
8 | lnc-CTD-2144E22.5.1-17 | chr16:34427706-34428105 | NONHSAT142163 |
9 | lnc-CTD-2144E22.5.1-31 | chr16:34751386-34751515 | NONHSAT142207 |
10 | lnc-CTD-2144E22.5.1-5 | chr16:34487252-34487506 | ENSG00000260958.2 |
11 | lnc-CTD-2144E22.5.1-31 | chr16:34756490-34756676 | NONHSAT142207 |
12 | lnc-CTD-2144E22.5.1-6 | chr16:34624074-34624955 | ENSG00000259841.2 |
13 | lnc-LINC00273-25 | chr16:34712350-34712699 | NONHSAT142191 |
14 | lnc-CTD-2144E22.5.1-5 | chr16:34518127-34518517 | ENSG00000260958.2 |
15 | lnc-LINC00273-24 | chr16:34641253-34641302 | NONHSAT142186 |
16 | lnc-CTD-2144E22.5.1-5 | chr16:34442308-34442392 | ENSG00000260958.2 |
17 | lnc-LINC00273-24 | chr16:34640930-34641001 | NONHSAT142186 |
18 | lnc-CTD-2144E22.5.1-31 | chr16:34758333-34758358 | NONHSAT142207 |
19 | lnc-CTD-2144E22.5.1-5 | chr16:34471671-34474425 | NONHSAT142170 |
20 | lnc-CTD-2144E22.5.1-5 | chr16:34482858-34483251 | NONHSAT142170 |
21 | lnc-CTD-2144E22.5.1-6 | chr16:34616840-34616969 | ENSG00000259841.2 |
22 | lnc-CTD-2144E22.5.1-6 | chr16:34597783-34597899 | ENSG00000259841.2 |
23 | lnc-CTD-2144E22.5.1-6 | chr16:34610877-34611020 | NONHSAT142183 |
24 | lnc-CTD-2144E22.5.1-6 | chr16:34617082-34617226 | ENSG00000259841.2 |
25 | lnc-CTD-2144E22.5.1-29 | chr16:34723608-34724583 | NONHSAT142194 |
26 | lnc-CTD-2144E22.5.1-6 | chr16:34625678-34626084 | NONHSAT142183 |
27 | lnc-CTD-2144E22.5.1-6 | chr16:34597787-34597899 | NONHSAT142183 |
28 | lnc-CTD-2144E22.5.1-6 | chr16:34597902-34598201 | ENSG00000259841.2 |
29 | lnc-LINC00273-22 | chr16:34570437-34570514 | NONHSAT142179 |
30 | lnc-CTD-2144E22.5.1-5 | chr16:34442330-34442392 | ENSG00000260958.2 |
31 | lnc-LINC00273-22 | chr16:34570743-34570817 | NONHSAT142179 |
32 | lnc-LINC00273-18 | chr16:34455954-34456419 | NONHSAT142168 |
33 | lnc-LINC00273-24 | chr16:34640118-34640617 | NONHSAT142186 |
34 | lnc-CTD-2144E22.5.1-6 | chr16:34620250-34620420 | ENSG00000259841.2 |
35 | lnc-CTD-2144E22.5.1-4 | chr16:34477709-34479085 | NONHSAT142171 |
36 | lnc-LINC00273-27 | chr16:34740133-34740549 | NONHSAT142200 |
37 | lnc-CTD-2144E22.5.1-4 | chr16:34478641-34479038 | XLOC_011699 |
38 | lnc-CTD-2144E22.5.1-14 | chr16:34368885-34369446 | NONHSAT142152 |
39 | lnc-CTD-2144E22.5.1-6 | chr16:34614340-34614458 | ENSG00000259841.2 |
40 | lnc-LINC00273-27 | chr16:34739459-34739785 | NONHSAT142198 |
41 | lnc-LINC00273-7 | chr16:34729913-34729959 | ENSG00000261445.1 |
42 | lnc-LINC00273-25 | chr16:34714529-34714852 | NONHSAT142191 |
43 | lnc-LINC00273-8 | chr16:34765218-34765705 | XLOC_011927 |
44 | lnc-LINC00273-7 | chr16:34730748-34730828 | ENSG00000261445.1 |
45 | lnc-LINC00273-25 | chr16:34712988-34713065 | NONHSAT142192 |
46 | lnc-LINC00273-28 | chr16:34740963-34741308 | NONHSAT142204 |
47 | lnc-LINC00273-15 | chr16:34383828-34384161 | NONHSAT142158 |
48 | lnc-CTD-2144E22.5.1-4 | chr16:34477761-34477848 | XLOC_011699 |
49 | lnc-CTD-2144E22.5.1-24 | chr16:34581756-34582668 | NONHSAT142180 |
50 | lnc-LINC00273-27 | chr16:34739464-34739785 | ENSG00000260857.2 |
No data |
No data |
Variant related genes | Relation type |
---|---|
SLC25A1P4 | TF binding region |
ENSG00000261510 | TF binding region |
UBE2MP1 | TF binding region |
ENSG00000260073 | TF binding region |
RARRES2P9 | TF binding region |
ENSG00000259836 | TF binding region |
ENSG00000259897 | TF binding region |
ENSG00000221532 | TF binding region |
ENSG00000260449 | TF binding region |
ENSG00000261752 | TF binding region |
ENSG00000264479 | TF binding region |
ENSG00000269622 | TF binding region |
ENSG00000260427 | TF binding region |
ENSG00000260341 | TF binding region |
ENSG00000261398 | TF binding region |
ENSG00000260291 | TF binding region |
ENSG00000261299 | TF binding region |
ENSG00000260598 | TF binding region |
ENSG00000261733 | TF binding region |
ENSG00000260857 | TF binding region |
ENSG00000261445 | TF binding region |
AGGF1P4 | TF binding region |
ENSG00000260958 | TF binding region |
ENSG00000261350 | TF binding region |
ENSG00000260153 | TF binding region |
ENSG00000214581 | TF binding region |
RARRES2P5 | TF binding region |
ENSG00000260590 | TF binding region |
ENSG00000261274 | TF binding region |
VN1R69P | TF binding region |
VN1R68P | TF binding region |
ENSG00000259841 | TF binding region |
ENSG00000261711 | TF binding region |
RARRES2P7 | TF binding region |
RARRES2P6 | TF binding region |
ENSG00000260480 | TF binding region |
ENSG00000261800 | TF binding region |
FGFR3P5 | TF binding region |
ENSG00000261836 | TF binding region |
ENSG00000260680 | TF binding region |
ENSG00000260846 | TF binding region |
SLC25A1P4 | CpG island |
ENSG00000261510 | CpG island |
UBE2MP1 | CpG island |
ENSG00000260073 | CpG island |
RARRES2P9 | CpG island |
ENSG00000259836 | CpG island |
ENSG00000259897 | CpG island |
ENSG00000221532 | CpG island |
ENSG00000260449 | CpG island |
ENSG00000261752 | CpG island |
ENSG00000264479 | CpG island |
ENSG00000269622 | CpG island |
ENSG00000260427 | CpG island |
ENSG00000260341 | CpG island |
ENSG00000261398 | CpG island |
ENSG00000260291 | CpG island |
ENSG00000261299 | CpG island |
ENSG00000260598 | CpG island |
ENSG00000261733 | CpG island |
ENSG00000260857 | CpG island |
ENSG00000261445 | CpG island |
AGGF1P4 | CpG island |
ENSG00000260958 | CpG island |
ENSG00000261350 | CpG island |
ENSG00000260153 | CpG island |
ENSG00000214581 | CpG island |
RARRES2P5 | CpG island |
ENSG00000260590 | CpG island |
ENSG00000261274 | CpG island |
VN1R69P | CpG island |
VN1R68P | CpG island |
ENSG00000259841 | CpG island |
ENSG00000261711 | CpG island |
RARRES2P7 | CpG island |
RARRES2P6 | CpG island |
ENSG00000260480 | CpG island |
ENSG00000261800 | CpG island |
FGFR3P5 | CpG island |
ENSG00000261836 | CpG island |
ENSG00000260680 | CpG island |
ENSG00000260846 | CpG island |
ENSG00000260073 | chromatin interactions |
ENSG00000137871 | chromatin interactions |
ENSG00000261398 | chromatin interactions |
ZNF407 | miRNA target sites |
ZNF451 | miRNA target sites |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs189373044 | chr16:34357764-34357765 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
2 | rs72810738 | chr16:34363936-34363937 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
3 | rs537487736 | chr16:34363963-34363964 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
4 | rs373308229 | chr16:34363976-34363977 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
5 | rs191879914 | chr16:34363984-34363985 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
6 | rs568330893 | chr16:34363987-34363988 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
7 | rs79983807 | chr16:34363998-34363999 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
8 | rs373395798 | chr16:34364015-34364016 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
9 | rs553989491 | chr16:34364025-34364026 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
10 | rs140621377 | chr16:34366293-34366294 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
11 | rs183498108 | chr16:34366310-34366311 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
12 | rs375605560 | chr16:34366384-34366385 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
13 | rs538365477 | chr16:34368629-34368630 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
14 | rs556513875 | chr16:34368782-34368783 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
15 | rs35341995 | chr16:34368786-34368787 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
16 | rs574936526 | chr16:34368797-34368798 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
17 | rs193286490 | chr16:34368806-34368807 | Enhancers | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
18 | rs554398558 | chr16:34368866-34368867 | Enhancers | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
19 | rs573065618 | chr16:34368928-34368929 | Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
20 | rs558622640 | chr16:34368942-34368943 | Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
21 | rs540389585 | chr16:34368946-34368947 | Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
22 | rs184674492 | chr16:34368978-34368979 | Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
23 | rs188342702 | chr16:34369123-34369124 | Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
24 | rs533445395 | chr16:34369126-34369127 | Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
25 | rs367743175 | chr16:34369154-34369155 | Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
26 | rs180682492 | chr16:34369192-34369193 | Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
27 | rs545561589 | chr16:34369251-34369252 | Enhancers Flanking Active TSS | lncRNA | n/a | Overlapped CNVs | n/a |
28 | rs563663981 | chr16:34369262-34369263 | Enhancers Flanking Active TSS | lncRNA | n/a | Overlapped CNVs | n/a |
29 | rs530972655 | chr16:34369278-34369279 | Enhancers Flanking Active TSS | lncRNA | n/a | Overlapped CNVs | n/a |
30 | rs138740236 | chr16:34369300-34369301 | Enhancers Flanking Active TSS | lncRNA | n/a | Overlapped CNVs | n/a |
31 | rs576853777 | chr16:34369352-34369353 | Enhancers Flanking Active TSS | lncRNA | n/a | Overlapped CNVs | n/a |
32 | rs564234198 | chr16:34369354-34369355 | Enhancers Flanking Active TSS | lncRNA | n/a | Overlapped CNVs | n/a |
33 | rs567906014 | chr16:34369355-34369356 | Enhancers Flanking Active TSS | lncRNA | n/a | Overlapped CNVs | n/a |
34 | rs528796442 | chr16:34369440-34369441 | Enhancers Flanking Active TSS | lncRNA | n/a | Overlapped CNVs | n/a |
35 | rs114610950 | chr16:34369446-34369447 | Enhancers Flanking Active TSS | lncRNA | n/a | Overlapped CNVs | n/a |
36 | rs185512521 | chr16:34369468-34369469 | Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
37 | rs117710026 | chr16:34369483-34369484 | Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
38 | rs141371225 | chr16:34369491-34369492 | Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
39 | rs375754831 | chr16:34369549-34369550 | Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
40 | rs550311163 | chr16:34369564-34369565 | Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
41 | rs546614571 | chr16:34369573-34369574 | Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
42 | rs370415098 | chr16:34369577-34369578 | Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
43 | rs568615841 | chr16:34369584-34369585 | Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
44 | rs535807500 | chr16:34369609-34369610 | Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
45 | rs554285601 | chr16:34369699-34369700 | Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
46 | rs548387080 | chr16:34369732-34369733 | Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
47 | rs189718955 | chr16:34369733-34369734 | Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
48 | rs533871289 | chr16:34369754-34369755 | Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
49 | rs558702310 | chr16:34369755-34369756 | Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
50 | rs562002520 | chr16:34369918-34369919 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Hodgkin''s lymphoma | 20651079 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Melanoma | 18172304 | CNVD |
Breast cancer | 16608533 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 17133270 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Lung adenocarcinoma | 17086460 | CNVD |
Lung cancer | 17086460 | CNVD |
Autism | 22566537 | CNVD |
Intellectual disability | 22566537 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 17603634 | CNVD |
Breast cancer | 21264507 | CNVD |
Cervical cancer | 21063398 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Autism | 19415332 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Schizophrenia | 22958593 | CNVD |
Ductal carcinoma | 22052326 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Autism | 22495311 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Breast cancer | 21858162 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Mental retardation | 19951919 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Breast cancer | 21785460 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Breast cancer | 21990379 | CNVD |
Astrocytoma | 22246337 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Epilepsy | 22499536 | CNVD |
Attention deficit hyperactivity disorder | 21324949 | CNVD |
Austim spectrum disorder | 21302340 | CNVD |
Autism | 22513405 | CNVD |
Autism | 22958593 | CNVD |
Autism | 18184952 | CNVD |
Autism | 19966786 | CNVD |
Autism | 21394203 | CNVD |
Autism | 21969575 | CNVD |
Autism | 22241247 | CNVD |
Autism | 20970697 | CNVD |
Autism | 20942916 | CNVD |
Epilepsy | 20970697 | CNVD |
Intellectual disability | 22045946 | CNVD |
Mental retardation | 19966786 | CNVD |
Developmental delay | 20808231 | CNVD |
Obesity | 20808231 | CNVD |
Autism | 18923514 | CNVD |
Obesity | 21881559 | CNVD |
Obesity | 21956041 | CNVD |
Autism | 20659124 | CNVD |
Mental retardation | 21062444 | CNVD |
Schizophrenia | 20587603 | CNVD |
Schizophrenia | 21285140 | CNVD |
Schizophrenia | 22885689 | CNVD |
Schizophrenia | 20553308 | CNVD |
Schizophrenia | 20970697 | CNVD |
Schizophrenia | 20433910 | CNVD |
Schizophrenia | 22241247 | CNVD |
Autism | 19242545 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Intracranial ependymoma | 16609018 | CNVD |
Schizophrenia | 21399695 | CNVD |
Autism | 21956041 | CNVD |
Disorders of sex development | 21048976 | CNVD |
Autism | 22067053 | CNVD |
Autism | 18156158 | CNVD |
Mental retardation | 20152051 | CNVD |
Autism | 19218893 | CNVD |
Autism | 21289514 | CNVD |
Schizophrenia | 19855392 | CNVD |
neurodevelopmental Syndrome | 20503337 | CNVD |
Benign familial neonatal-infantile seizures | 21060786 | CNVD |
Low-grade fibromyxoid sarcoma | 0 | CNVD |
Cancer | 21183584 | CNVD |
Low-grade fibromyxoid sarcoma | 21536545 | CNVD |
Breast cancer | 21045282 | CNVD |
Neuroblastoma | 20406844 | CNVD |
Autism | 19050728 | CNVD |
Epilepsy | 20923578 | CNVD |
Psychiatric disorder | 19050728 | CNVD |
Schizophrenia | 19348701 | CNVD |
Attention deficit hyperactivity disorder | 19097825 | CNVD |
Autism | 20964600 | CNVD |
Schizophrenia | 19955444 | CNVD |
Schizophrenia | 18990708 | CNVD |
Schizophrenia | 19571808 | CNVD |
Breast cancer | 20409316 | CNVD |
Severe combined immunodeficiency | 19097825 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Autism | 18522746 | CNVD |
Wilms tumour | 21544195 | CNVD |
Cancer | 20164920 | CNVD |
Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
Breast cancer | 21364760 | CNVD |
Renal cell carcinoma | 18194544 | CNVD |
Lung cancer | 18438408 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Breast cancer | 21509527 | CNVD |
Schizophrenia | 20967226 | CNVD |
Williams Syndrome | 20824207 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Schizophrenia | 23813976 | CNVD |
Bipolar disorder | 19214233 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Breast cancer | 22522925 | CNVD |
Rett syndrome | 21593744 | CNVD |
Autism | 19287141 | CNVD |
Prostate cancer | 18632612 | CNVD |
Cancer | 20164919 | CNVD |
Autism | 18414403 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr16:34368800-34369200 | Enhancers | NHEK | skin |
2 | chr16:34369200-34369400 | Enhancers | HMEC | breast |
3 | chr16:34369200-34369400 | Flanking Active TSS | NHEK | skin |
4 | chr16:34369200-34370600 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
5 | chr16:34369400-34369600 | Enhancers | NHEK | skin |
6 | chr16:34369400-34369800 | Flanking Active TSS | HMEC | breast |
7 | chr16:34369600-34369800 | Flanking Active TSS | NHEK | skin |
8 | chr16:34369800-34370600 | Enhancers | HMEC | breast |
9 | chr16:34369800-34370600 | Enhancers | NHEK | skin |
10 | chr16:34370600-34371600 | Weak transcription | NHEK | skin |
11 | chr16:34370600-34371800 | Weak transcription | HMEC | breast |
12 | chr16:34371600-34372400 | Enhancers | NHEK | skin |
13 | chr16:34371800-34372200 | Enhancers | HMEC | breast |
14 | chr16:34374000-34387000 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
15 | chr16:34374200-34376800 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
16 | chr16:34374600-34374800 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
17 | chr16:34379000-34384200 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
18 | chr16:34380400-34385200 | ZNF genes & repeats | Fetal Brain Female | brain |
19 | chr16:34380800-34383200 | ZNF genes & repeats | iPS-18 Cell Line | embryonic stem cell |
20 | chr16:34381000-34382400 | ZNF genes & repeats | Foreskin Fibroblast Primary Cells skin02 | Skin |
21 | chr16:34382600-34382800 | ZNF genes & repeats | Foreskin Keratinocyte Primary Cells skin02 | Skin |
22 | chr16:34385200-34385800 | ZNF genes & repeats | Foreskin Keratinocyte Primary Cells skin02 | Skin |
23 | chr16:34386000-34386200 | ZNF genes & repeats | Fetal Stomach | stomach |
24 | chr16:34407600-34409200 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
25 | chr16:34408200-34409000 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
26 | chr16:34408400-34409000 | ZNF genes & repeats | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
27 | chr16:34409000-34410800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
28 | chr16:34409200-34410600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
29 | chr16:34410600-34411600 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
30 | chr16:34410800-34411600 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
31 | chr16:34411200-34411400 | Enhancers | Right Atrium | heart |
32 | chr16:34415000-34419400 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
33 | chr16:34416200-34416400 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
34 | chr16:34416200-34417400 | ZNF genes & repeats | Fetal Muscle Trunk | muscle |
35 | chr16:34418800-34419400 | ZNF genes & repeats | iPS-15b Cell Line | embryonic stem cell |
36 | chr16:34419600-34422800 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
37 | chr16:34420000-34422200 | ZNF genes & repeats | Foreskin Melanocyte Primary Cells skin01 | Skin |
38 | chr16:34420400-34420800 | ZNF genes & repeats | iPS-15b Cell Line | embryonic stem cell |
39 | chr16:34421000-34421200 | ZNF genes & repeats | Foreskin Fibroblast Primary Cells skin02 | Skin |
40 | chr16:34423000-34423200 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
41 | chr16:34429200-34433000 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
42 | chr16:34429400-34429600 | Bivalent/Poised TSS | ES-I3 Cell Line | embryonic stem cell |
43 | chr16:34429400-34430400 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
44 | chr16:34432200-34433400 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
45 | chr16:34437400-34438400 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
46 | chr16:34438400-34441200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
47 | chr16:34441200-34442800 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
48 | chr16:34441400-34442600 | Bivalent/Poised TSS | ES-I3 Cell Line | embryonic stem cell |
49 | chr16:34442000-34443200 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
50 | chr16:34442200-34443000 | Active TSS | ES-WA7 Cell Line | embryonic stem cell |