Variant report

Variant	nsv428327
Chromosome Location	chr16:46556968-46718490
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1968)
CpG islands
(count:2140)
Chromatin interactive
region (count:59)
LncRNA
region (count:10)
Mature miRNA
region (count: 0)
miRNA target
sites (count:15)

(count:1968 , 50 per page) page: 1 2 3 4 5 6 7 ... 40

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr16:46655249-46655276	K562	blood:	n/a	n/a
2	ARID3A	chr16:46616234-46616382	K562	blood:	n/a	n/a
3	ARID3A	chr16:46707412-46707608	HepG2	liver:	n/a	n/a
4	ARID3A	chr16:46655249-46655386	HepG2	liver:	n/a	n/a
5	ARID3A	chr16:46656378-46656513	HepG2	liver:	n/a	n/a
6	ARID3A	chr16:46641522-46641749	HepG2	liver:	n/a	n/a
7	ATF1	chr16:46655155-46655469	K562	blood:	n/a	n/a
8	ATF1	chr16:46683497-46683728	K562	blood:	n/a	n/a
9	ATF1	chr16:46617078-46617217	K562	blood:	n/a	n/a
10	ATF2	chr16:46645891-46646515	GM12878	blood:	n/a	n/a
11	ATF2	chr16:46692684-46693241	GM12878	blood:	n/a	n/a
12	BACH1	chr16:46625336-46625378	K562	blood:	n/a	n/a
13	BATF	chr16:46708611-46708840	GM12878	blood:	n/a	n/a
14	BATF	chr16:46692805-46693089	GM12878	blood:	n/a	n/a
15	BCL11A	chr16:46692944-46693214	GM12878	blood:	n/a	n/a
16	BCL3	chr16:46692761-46693193	GM12878	blood:	n/a	n/a
17	BCLAF1	chr16:46692614-46693388	GM12878	blood:	n/a	n/a
18	BCLAF1	chr16:46692673-46693262	GM12878	blood:	n/a	n/a
19	BCLAF1	chr16:46588341-46588614	GM12878	blood:	n/a	n/a
20	BHLHE40	chr16:46683487-46683811	K562	blood:	n/a	n/a
21	BHLHE40	chr16:46655119-46655478	K562	blood:	n/a	n/a
22	BHLHE40	chr16:46603093-46603220	K562	blood:	n/a	n/a
23	BHLHE40	chr16:46707413-46707487	K562	blood:	n/a	n/a
24	BHLHE40	chr16:46707447-46707607	GM12878	blood:	n/a	n/a
25	BHLHE40	chr16:46607758-46607783	K562	blood:	n/a	n/a
26	BRCA1	chr16:46655218-46655378	Hela-S3	cervix:	n/a	n/a
27	CBX3	chr16:46655078-46655632	K562	blood:	n/a	n/a
28	CBX3	chr16:46620112-46620343	K562	blood:	n/a	n/a
29	CBX3	chr16:46620089-46620441	K562	blood:	n/a	n/a
30	CCNT2	chr16:46654962-46655357	K562	blood:	n/a	chr16:46654987-46654996
31	CEBPB	chr16:46641523-46641704	Hela-S3	cervix:	n/a	n/a
32	CEBPB	chr16:46638673-46638923	HepG2	liver:	n/a	chr16:46638781-46638792
33	CEBPB	chr16:46661712-46661866	K562	blood:	n/a	n/a
34	CEBPB	chr16:46614642-46614766	K562	blood:	n/a	n/a
35	CEBPB	chr16:46607214-46607273	K562	blood:	n/a	n/a
36	CEBPB	chr16:46684260-46684454	IMR90	lung:	n/a	n/a
37	CEBPB	chr16:46661775-46661907	IMR90	lung:	n/a	n/a
38	CEBPB	chr16:46615792-46615910	HepG2	liver:	n/a	chr16:46615817-46615828
39	CEBPB	chr16:46638620-46638928	A549	lung:	n/a	chr16:46638781-46638792
40	CEBPB	chr16:46616290-46616539	K562	blood:	n/a	n/a
41	CEBPB	chr16:46692819-46693362	GM12878	blood:	n/a	n/a
42	CEBPB	chr16:46655154-46655422	Hela-S3	cervix:	n/a	n/a
43	CEBPB	chr16:46669619-46669725	A549	lung:	n/a	chr16:46669688-46669699
44	CEBPB	chr16:46638628-46638845	IMR90	lung:	n/a	chr16:46638781-46638792
45	CEBPB	chr16:46638706-46638984	A549	lung:	n/a	chr16:46638781-46638792
46	CEBPB	chr16:46614646-46614761	IMR90	lung:	n/a	n/a
47	CEBPB	chr16:46615804-46615858	K562	blood:	n/a	chr16:46615817-46615828
48	CEBPB	chr16:46661739-46661929	K562	blood:	n/a	n/a
49	CEBPB	chr16:46663360-46663531	Hela-S3	cervix:	n/a	chr16:46663464-46663476
50	CEBPB	chr16:46661697-46661935	HepG2	liver:	n/a	n/a

(count:2140 , 50 per page) page: 1 2 3 4 5 6 7 ... 43

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr16:46602737-46602787	ovcar-3	ovarian:	n/a
2	chr16:46607903-46607953	AG10803	skin:	n/a
3	chr16:46655247-46655297	HPAEpiC	pulmonary alveolar:	n/a
4	chr16:46588509-46588559	LNCaP	prostate:	n/a
5	chr16:46603259-46603309	HMEC	breast:	n/a
6	chr16:46602737-46602787	ovcar-3	ovarian:	n/a
7	chr16:46607903-46607953	AG10803	skin:	n/a
8	chr16:46655247-46655297	HPAEpiC	pulmonary alveolar:	n/a
9	chr16:46588509-46588559	LNCaP	prostate:	n/a
10	chr16:46603259-46603309	HMEC	breast:	n/a
11	chr16:46655473-46655523	HCPEpiC	choroid plexus:	n/a
12	chr16:46654868-46654918	AG04449	skin:	fetal
13	chr16:46655909-46655959	SKMC	muscle:	n/a
14	chr16:46648124-46648174	RPTEC	kidney:	n/a
15	chr16:46603021-46603071	Caco-2	colon:	n/a
16	chr16:46603259-46603309	PrEC	prostate:	n/a
17	chr16:46683727-46683777	BJ	skin:	n/a
18	chr16:46655473-46655523	AG04450	lung:	fetal
19	chr16:46651918-46651968	NHBE	bronchial:	n/a
20	chr16:46651918-46651968	RPTEC	kidney:	n/a
21	chr16:46655247-46655297	HMEC	breast:	n/a
22	chr16:46655675-46655725	BJ	skin:	n/a
23	chr16:46655909-46655959	K562	blood:	n/a
24	chr16:46683727-46683777	GM12878	blood:	n/a
25	chr16:46648124-46648174	BJ	skin:	n/a
26	chr16:46603015-46603065	GM12892	blood:	n/a
27	chr16:46607688-46607738	SK-N-SH_RA	brain:	n/a
28	chr16:46607688-46607738	MCF-7	breast:	n/a
29	chr16:46654691-46654741	HRE	kidney:	n/a
30	chr16:46663534-46663584	HMEC	breast:	n/a
31	chr16:46660595-46660645	NB4	blood:	n/a
32	chr16:46663534-46663584	HIPEpiC	eye:	n/a
33	chr16:46694236-46694286	NH-A	brain:	n/a
34	chr16:46655473-46655523	GM12891	blood:	n/a
35	chr16:46660546-46660596	A549	lung:	n/a
36	chr16:46683644-46683694	PrEC	prostate:	n/a
37	chr16:46648124-46648174	HRPEpiC	eye:	n/a
38	chr16:46683644-46683694	AG04449	skin:	fetal
39	chr16:46655096-46655146	MCF10A-Er-Src	breast:	n/a
40	chr16:46648124-46648174	HRE	kidney:	n/a
41	chr16:46655096-46655146	AG04449	skin:	fetal
42	chr16:46654722-46654772	HCT-116	colon:	n/a
43	chr16:46654868-46654918	HEEpiC	esophagus:	n/a
44	chr16:46615086-46615136	NB4	blood:	n/a
45	chr16:46655473-46655523	SK-N-SH	brain:	n/a
46	chr16:46663534-46663584	GM12891	blood:	n/a
47	chr16:46603059-46603109	LNCaP	prostate:	n/a
48	chr16:46602737-46602787	HNPCEpiC	eye:	n/a
49	chr16:46654868-46654918	GM06990	blood:	n/a
50	chr16:46615086-46615136	HRE	kidney:	n/a

(count:59 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr16:46707772..46709754-chr16:46720793..46723011,2	MCF-7	breast:
2	chr16:46628966..46631349-chr16:46648629..46650816,2	K562	blood:
3	chr16:46642369..46643957-chr16:46648260..46651071,2	K562	blood:
4	chr16:46598432..46601412-chr16:46613348..46615647,2	K562	blood:
5	chr16:46588378..46588920-chr16:46662972..46663507,2	K562	blood:
6	chr16:46690502..46692806-chr16:46719055..46720847,2	MCF-7	breast:
7	chr16:46588077..46588805-chr16:46640597..46641513,2	MCF-7	breast:
8	chr16:46682731..46685856-chr16:46692484..46695135,3	K562	blood:
9	chr16:46589331..46591714-chr16:46654314..46656100,2	K562	blood:
10	chr16:46640408..46641999-chr16:46649001..46651446,2	K562	blood:
11	chr16:46624881..46627555-chr16:46632548..46635416,2	K562	blood:
12	chr16:46663477..46665810-chr16:46674721..46676333,2	K562	blood:
13	chr16:46706996..46707945-chr16:46942502..46943366,7	K562	blood:
14	chr16:46701863..46703903-chr16:46713521..46715933,2	K562	blood:
15	chr16:46718438..46720564-chr16:46723434..46725231,2	K562	blood:
16	chr16:46705954..46707514-chr16:46711367..46713742,2	K562	blood:
17	chr16:46588077..46588805-chr16:46640597..46641513,2	MCF-7	breast:
18	chr16:46601237..46602830-chr16:46605603..46608385,2	K562	blood:
19	chr16:46717600..46719603-chr16:46859611..46862308,2	K562	blood:
20	chr16:46707001..46707974-chr16:46963384..46964655,3	K562	blood:
21	chr16:46607322..46610381-chr16:46616231..46620606,3	K562	blood:
22	chr16:46624881..46627555-chr16:46632548..46635416,2	K562	blood:
23	chr16:46704847..46706863-chr16:46794204..46795904,2	MCF-7	breast:
24	chr16:46688552..46690949-chr16:46691270..46693508,2	K562	blood:
25	chr16:46689494..46691834-chr16:46696786..46698368,2	K562	blood:
26	chr16:46632677..46635528-chr16:46640441..46642160,2	K562	blood:
27	chr16:46650731..46653063-chr16:46653686..46656157,4	K562	blood:
28	chr16:46688552..46690949-chr16:46691270..46693508,2	K562	blood:
29	chr16:46653721..46656886-chr16:46721851..46724551,4	K562	blood:
30	chr16:46715468..46717180-chr16:46722050..46724165,2	MCF-7	breast:
31	chr16:46651769..46655217-chr16:46661271..46664188,4	K562	blood:
32	chr16:46668809..46671156-chr16:46672508..46674689,2	K562	blood:
33	chr16:46649901..46653063-chr16:46653348..46656157,4	K562	blood:
34	chr16:46663117..46663909-chr16:46963648..46964236,2	MCF-7	breast:
35	chr16:46717563..46719531-chr16:46720868..46724407,3	MCF-7	breast:
36	chr16:46681844..46684169-chr16:46721518..46723822,2	K562	blood:
37	chr16:46603053..46604562-chr16:46606887..46609535,2	MCF-7	breast:
38	chr16:46638622..46640277-chr16:46650672..46652723,2	K562	blood:
39	chr16:46588378..46588920-chr16:46662972..46663507,2	K562	blood:
40	chr16:46649901..46653063-chr16:46653348..46656157,4	K562	blood:
41	chr11:125334060..125334821-chr16:46593821..46594420,2	HCT-116	colon:
42	chr16:46701863..46703903-chr16:46713521..46715933,2	K562	blood:
43	chr16:46707953..46708653-chr16:46887447..46888372,2	K562	blood:
44	chr16:46663178..46663960-chr16:46723479..46724005,2	K562	blood:
45	chr16:46632677..46635528-chr16:46640441..46642160,2	K562	blood:
46	chr16:46598432..46601412-chr16:46613348..46615647,2	K562	blood:
47	chr16:46690889..46693240-chr16:46695095..46696661,2	K562	blood:
48	chr16:46663477..46665810-chr16:46674721..46676333,2	K562	blood:
49	chr16:46636261..46637898-chr16:46641523..46644415,2	K562	blood:
50	chr16:46651769..46655217-chr16:46661271..46664188,4	K562	blood:

(count:10 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VPS35-1	chr16:46655169-46655263	NONHSAT142254
2	lnc-SHCBP1-2	chr16:46695441-46695503	ENSG00000261131.1
3	lnc-ORC6-1	chr16:46683582-46683761	NONHSAT142257
4	lnc-VPS35-1	chr16:46654378-46654812	NONHSAT142254
5	lnc-ORC6-4	chr16:46605449-46606048	NONHSAT142252
6	lnc-ORC6-1	chr16:46683038-46683255	NONHSAT142257
7	lnc-MYLK3-5	chr16:46707358-46707839	NONHSAT142259
8	lnc-SHCBP1-1	chr16:46656773-46657792	ENSG00000261512.2
9	lnc-SHCBP1-2	chr16:46694608-46694865	ENSG00000261131.1
10	lnc-SHCBP1-1	chr16:46658269-46658355	ENSG00000261512.2

No data

(count:15 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	SHCBP1	hsa-miR-19b-3p	chr16:46615598-46615621
2	VPS35	hsa-miR-27a-3p	chr16:46694129-46694151
3	SHCBP1	hsa-miR-340-5p	chr16:46615462-46615482
4	VPS35	hsa-miR-590-3p	chr16:46695671-46695691
5	SHCBP1	hsa-miR-19b-3p	chr16:46615604-46615597
6	SHCBP1	hsa-miR-340-5p	chr16:46614530-46614551
7	SHCBP1	hsa-miR-33a-5p	chr16:46615444-46615464
8	VPS35	hsa-miR-590-3p	chr16:46694205-46694222
9	VPS35	hsa-miR-24-3p	chr16:46694780-46694801
10	SHCBP1	hsa-miR-19b-3p	chr16:46615488-46615482
11	VPS35	hsa-miR-590-3p	chr16:46695074-46695094
12	SHCBP1	hsa-miR-19b-3p	chr16:46615193-46615218
13	VPS35	hsa-miR-590-3p	chr16:46694136-46694156
14	VPS35	hsa-miR-590-3p	chr16:46694554-46694575
15	SHCBP1	hsa-miR-425-5p	chr16:46615267-46615289

Variant related genes	Relation type
ENSG00000261131	TF binding region
RAB43P1	TF binding region
VPS35	TF binding region
ANKRD26P1	TF binding region
SHCBP1	TF binding region
ENSG00000260251	TF binding region
ENSG00000261512	TF binding region
RNU6-845P	TF binding region
ENSG00000260909	TF binding region
ENSG00000261356	TF binding region
ENSG00000261131	CpG island
RAB43P1	CpG island
VPS35	CpG island
ANKRD26P1	CpG island
SHCBP1	CpG island
ENSG00000260251	CpG island
ENSG00000261512	CpG island
RNU6-845P	CpG island
ENSG00000260909	CpG island
ENSG00000261356	CpG island
ENSG00000069329	chromatin interactions
ENSG00000261131	chromatin interactions
ENSG00000171241	chromatin interactions
ENSG00000199448	chromatin interactions
ENSG00000260909	chromatin interactions
ENSG00000091651	chromatin interactions
ENSG00000260251	chromatin interactions

Extended variants
information (count: 3967 )
Associated
traits (count: 62 )

Variant overlapped rSNPs/rCNVs (count:3967 , 50 per page) page: 1 2 3 4 5 6 7 ... 80

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs559914548	chr16:46558608-46558609	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs371768594	chr16:46558665-46558666	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs545489269	chr16:46558681-46558682	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs563679924	chr16:46558728-46558729	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs374914550	chr16:46558735-46558736	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs530919772	chr16:46558813-46558814	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs185954622	chr16:46558867-46558868	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs67611436	chr16:46558868-46558869	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs528417750	chr16:46558967-46558968	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs188858654	chr16:46558991-46558992	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs181991312	chr16:46558993-46558994	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs538306987	chr16:46559051-46559052	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs557014304	chr16:46559057-46559058	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs186223350	chr16:46559069-46559070	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs535827222	chr16:46559167-46559168	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs554167859	chr16:46559174-46559175	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs116031542	chr16:46559181-46559182	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs139166040	chr16:46581814-46581815	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs567051747	chr16:46581822-46581823	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs544282890	chr16:46581834-46581835	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs528052096	chr16:46581847-46581848	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs546207225	chr16:46581931-46581932	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs191201362	chr16:46581956-46581957	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs565989785	chr16:46581963-46581964	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs539743930	chr16:46582006-46582007	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs370716972	chr16:46582148-46582149	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs377112635	chr16:46582185-46582186	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs551784557	chr16:46582204-46582205	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs375704883	chr16:46582222-46582223	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs117137313	chr16:46582233-46582234	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs182579310	chr16:46582243-46582244	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs555875583	chr16:46582301-46582302	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs115876291	chr16:46582317-46582318	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs541397650	chr16:46582319-46582320	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs114625710	chr16:46582331-46582332	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs578007664	chr16:46582341-46582342	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs68074363	chr16:46582406-46582407	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs16945726	chr16:46582426-46582427	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs530599134	chr16:46582470-46582471	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs542438614	chr16:46582482-46582483	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs560618001	chr16:46582491-46582492	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs528179780	chr16:46582568-46582569	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs546138028	chr16:46582671-46582672	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs570906285	chr16:46582676-46582677	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs532171322	chr16:46582677-46582678	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs377502024	chr16:46582733-46582734	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs535258983	chr16:46582735-46582736	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs570354524	chr16:46582754-46582755	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs370409080	chr16:46582776-46582777	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs147179015	chr16:46582817-46582818	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:62)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164920	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Autism	19955444	CNVD
Schizophrenia	19955444	CNVD
Renal cell carcinoma	18765545	CNVD
Sudden cardiac death	19188705	CNVD
Multiple myeloma	16616336	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21364760	CNVD
Ewing''s sarcoma	17952124	CNVD
Myelofibrosis	22110671	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Bladder cancer	21909424	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Prostate cancer	22341455	CNVD

Chromatin state (count:2619 , 50 per page) page: 1 2 3 4 5 6 7 ... 53

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:46558600-46559200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr16:46581800-46583000	Enhancers	Fetal Lung	lung
3	chr16:46588400-46588600	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr16:46588400-46588600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr16:46588400-46588600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr16:46588400-46588600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr16:46588400-46588600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr16:46588400-46588600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr16:46588400-46588600	Enhancers	Adipose Nuclei	Adipose
10	chr16:46588400-46588600	Active TSS	K562	blood
11	chr16:46588400-46588800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr16:46588400-46588800	Active TSS	Muscle Satellite Cultured Cells	--
13	chr16:46588400-46588800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr16:46588400-46588800	Active TSS	Brain Angular Gyrus	brain
15	chr16:46588400-46588800	Active TSS	Brain Cingulate Gyrus	brain
16	chr16:46588400-46588800	Enhancers	Fetal Muscle Trunk	muscle
17	chr16:46588400-46588800	Enhancers	Stomach Mucosa	stomach
18	chr16:46588400-46588800	Active TSS	HepG2	liver
19	chr16:46588400-46588800	Active TSS	NHDF-Ad	bronchial
20	chr16:46588600-46588800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr16:46588600-46588800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
22	chr16:46588600-46588800	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr16:46588600-46588800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr16:46588600-46588800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr16:46588600-46588800	Flanking Active TSS	K562	blood
26	chr16:46588800-46589400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr16:46588800-46589600	Weak transcription	NHDF-Ad	bronchial
28	chr16:46588800-46590800	Weak transcription	K562	blood
29	chr16:46589600-46591600	Enhancers	NHDF-Ad	bronchial
30	chr16:46589800-46590000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr16:46589800-46590200	Enhancers	Osteobl	bone
32	chr16:46589800-46590400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr16:46590200-46594000	Weak transcription	Osteobl	bone
34	chr16:46590400-46591400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr16:46590800-46591000	Bivalent/Poised TSS	HepG2	liver
36	chr16:46590800-46591000	Flanking Active TSS	K562	blood
37	chr16:46591000-46591200	Enhancers	K562	blood
38	chr16:46591000-46591600	Bivalent Enhancer	HepG2	liver
39	chr16:46591200-46591600	Flanking Active TSS	K562	blood
40	chr16:46591400-46592000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr16:46591600-46592000	Enhancers	K562	blood
42	chr16:46594000-46594200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr16:46594000-46594200	Enhancers	Osteobl	bone
44	chr16:46599800-46600000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr16:46600000-46602000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr16:46600400-46602800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr16:46601400-46603000	Weak transcription	Right Atrium	heart
48	chr16:46602000-46602600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr16:46602600-46603600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr16:46602800-46603200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links