Variant report

Variant	nsv428505
Chromosome Location	chr7:79039804-79040511
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 80 )

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs531085969	chr7:79039812-79039813	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs145642112	chr7:79039835-79039836	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs555354636	chr7:79039925-79039926	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs79629355	chr7:79039962-79039963	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs533147704	chr7:79039980-79039981	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs546738190	chr7:79040003-79040004	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs148448222	chr7:79040027-79040028	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs566579516	chr7:79040072-79040073	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs375369924	chr7:79040098-79040099	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs185812035	chr7:79040100-79040101	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs568223888	chr7:79040135-79040136	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs191113607	chr7:79040151-79040152	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs181100531	chr7:79040168-79040169	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs539034010	chr7:79040238-79040239	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs570507772	chr7:79040243-79040244	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs539391708	chr7:79040345-79040346	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs68016561	chr7:79040400-79040401	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs573902202	chr7:79040410-79040411	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs572937933	chr7:79040439-79040440	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs73379200	chr7:79040443-79040444	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs2158708	chr7:79040490-79040491	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs185860410	chr7:79040504-79040505	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:80)

Disease	PMID	Source
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Biliary cancer	19435499	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164920	CNVD
Neurodevelopmental disorder	22521361	CNVD
Williams Syndrome	20824207	CNVD
Metanephric adenoma	20802469	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	21364760	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Williams-beuren syndrome	16826523	CNVD
Olfactory neuroblastoma	18408657	CNVD
Wilms tumour	19318497	CNVD
Multiple myeloma	16616336	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Schizophrenia	17879154	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	16461572	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	20858243	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79031000-79040800	Weak transcription	Brain Anterior Caudate	brain
2	chr7:79036800-79044200	Weak transcription	Adipose Nuclei	Adipose
3	chr7:79037000-79040200	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:79037200-79048800	Weak transcription	NHLF	lung
5	chr7:79037400-79040800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:79037400-79041600	Weak transcription	Brain Angular Gyrus	brain
7	chr7:79037400-79041600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:79038200-79040600	Weak transcription	Brain Substantia Nigra	brain
9	chr7:79039600-79040000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:79039600-79040000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:79039600-79041200	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr7:79040000-79043800	Weak transcription	NHDF-Ad	bronchial
13	chr7:79040000-79048800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:79040000-79049200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:79040200-79041600	Enhancers	Brain Hippocampus Middle	brain

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