Variant report

Variant	nsv428646
Chromosome Location	chr15:87612249-87759363
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:40)
LncRNA
region (count:13)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:40 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:87732266..87735003-chr15:88069190..88071031,2	MCF-7	breast:
2	chr15:87664612..87666658-chr15:87671370..87673552,2	MCF-7	breast:
3	chr15:87677782..87683862-chr15:87687780..87692291,5	MCF-7	breast:
4	chr15:87753727..87755368-chr15:87864016..87866117,2	MCF-7	breast:
5	chr15:87733763..87735542-chr15:87742187..87743729,2	K562	blood:
6	chr15:87729361..87731119-chr15:88014734..88017695,2	MCF-7	breast:
7	chr15:87739914..87741938-chr15:87753151..87755099,2	MCF-7	breast:
8	chr15:87697291..87699690-chr15:87706796..87708565,2	MCF-7	breast:
9	chr15:87694136..87695911-chr15:87846882..87849642,2	K562	blood:
10	chr15:87735099..87738085-chr15:87738807..87741278,4	MCF-7	breast:
11	chr15:87733826..87735446-chr15:87763671..87765321,2	MCF-7	breast:
12	chr15:87711645..87713686-chr15:87716504..87718249,2	MCF-7	breast:
13	chr15:87666031..87668174-chr15:87674235..87675823,2	MCF-7	breast:
14	chr15:87739619..87741618-chr15:87760252..87763201,2	MCF-7	breast:
15	chr15:87735099..87738085-chr15:87738807..87741278,4	MCF-7	breast:
16	chr15:87711645..87713686-chr15:87716504..87718249,2	MCF-7	breast:
17	chr15:87746352..87748937-chr15:87757771..87760369,2	MCF-7	breast:
18	chr15:87588638..87589626-chr15:87664512..87665513,3	MCF-7	breast:
19	chr15:87625900..87629633-chr15:87631461..87633717,3	MCF-7	breast:
20	chr15:87746352..87748937-chr15:87757771..87760369,2	MCF-7	breast:
21	chr15:87733638..87735331-chr15:87739844..87741896,2	MCF-7	breast:
22	chr15:87664612..87666658-chr15:87671370..87673552,2	MCF-7	breast:
23	chr15:87662307..87663890-chr15:87676905..87678767,2	MCF-7	breast:
24	chr15:87677782..87683862-chr15:87687780..87692291,5	MCF-7	breast:
25	chr15:87634767..87638633-chr15:87639992..87643377,3	MCF-7	breast:
26	chr15:87614917..87617542-chr15:87884439..87886255,2	MCF-7	breast:
27	chr15:87733455..87734185-chr15:87830026..87830805,2	MCF-7	breast:
28	chr15:87736202..87738540-chr15:88062571..88065351,2	MCF-7	breast:
29	chr15:87733763..87735542-chr15:87742187..87743729,2	K562	blood:
30	chr15:87666031..87668174-chr15:87674235..87675823,2	MCF-7	breast:
31	chr15:87697291..87699690-chr15:87706796..87708565,2	MCF-7	breast:
32	chr15:87662307..87663890-chr15:87676905..87678767,2	MCF-7	breast:
33	chr15:87616838..87619677-chr15:87654360..87656187,2	MCF-7	breast:
34	chr15:87733638..87735331-chr15:87739844..87741896,2	MCF-7	breast:
35	chr15:87625900..87629633-chr15:87631461..87633717,3	MCF-7	breast:
36	chr15:87616838..87619677-chr15:87654360..87656187,2	MCF-7	breast:
37	chr15:87757862..87760573-chr15:87766173..87768733,2	MCF-7	breast:
38	chr15:87634767..87638633-chr15:87639992..87643377,3	MCF-7	breast:
39	chr15:87739914..87741938-chr15:87753151..87755099,2	MCF-7	breast:
40	chr15:87746222..87748538-chr15:88013434..88015211,2	MCF-7	breast:

(count:13 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NTRK3-6	chr15:87721877-87722287	NONHSAT048141
2	lnc-AGBL1-5	chr15:87723283-87723504	ucscGeneNc_uc002bnw_1
3	lnc-NTRK3-6	chr15:87720518-87722481	l_1211_chr15:87720517-87722997_testes
4	lnc-NTRK3-6	chr15:87709874-87712478	NONHSAT048141
5	lnc-AGBL1-6	chr15:87744399-87744607	l_1213_chr15:87744398-87764111_testes
6	lnc-AGBL1-6	chr15:87754790-87754937	l_1213_chr15:87744398-87764111_testes
7	lnc-AGBL1-5	chr15:87731666-87731773	ucscGeneNc_uc002bnw_1
8	lnc-NTRK3-6	chr15:87722635-87722997	l_1211_chr15:87720517-87722997_testes
9	lnc-AGBL1-5	chr15:87739263-87740701	ucscGeneNc_uc002bnw_1
10	lnc-AGBL1-5	chr15:87722277-87722400	ucscGeneNc_uc002bnw_1
11	lnc-AGBL1-5	chr15:87732052-87732116	ucscGeneNc_uc002bnw_1
12	lnc-AGBL1-5	chr15:87733580-87733717	ucscGeneNc_uc002bnw_1
13	lnc-AGBL1-5	chr15:87732736-87732816	ucscGeneNc_uc002bnw_1

No data

Variant related genes	Relation type
ENSG00000207150	chromatin interactions

Extended variants
information (count: 3961 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:3961 , 50 per page) page: 1 2 3 4 5 6 7 ... 80

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs182792993	chr15:87612276-87612277	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs543497836	chr15:87612366-87612367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs2043380	chr15:87612368-87612369	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
4	rs111948797	chr15:87612382-87612383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs573877432	chr15:87612383-87612384	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs538750416	chr15:87612426-87612427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs372364069	chr15:87612465-87612466	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs575506617	chr15:87612466-87612467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs543320026	chr15:87612547-87612548	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs186693371	chr15:87612551-87612552	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs35698773	chr15:87612561-87612562	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs200243328	chr15:87612568-87612569	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs7182526	chr15:87612648-87612649	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs7181227	chr15:87612659-87612660	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs34267352	chr15:87612674-87612675	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs548521773	chr15:87612725-87612726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs2570128	chr15:87612741-87612742	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs563306235	chr15:87612767-87612768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs530392806	chr15:87612800-87612801	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs549321754	chr15:87612801-87612802	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs567595838	chr15:87612806-87612807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs2701415	chr15:87612828-87612829	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs554460791	chr15:87612854-87612855	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs563689779	chr15:87612870-87612871	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs145715108	chr15:87612895-87612896	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs539130275	chr15:87612900-87612901	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs386786072	chr15:87612901-87612902	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs368358281	chr15:87612902-87612903	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs534814156	chr15:87612916-87612917	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs112894535	chr15:87612920-87612921	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs368523485	chr15:87612943-87612944	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs574636680	chr15:87612945-87612946	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs564678859	chr15:87612955-87612956	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs573241230	chr15:87613001-87613002	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs540521870	chr15:87613046-87613047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs148496256	chr15:87613047-87613048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs7181984	chr15:87613048-87613049	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs115016829	chr15:87613079-87613080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs145469167	chr15:87613081-87613082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs575293302	chr15:87613083-87613084	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs79523952	chr15:87613107-87613108	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs542681790	chr15:87613128-87613129	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs560860741	chr15:87613190-87613191	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs377644871	chr15:87613204-87613205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs141306473	chr15:87613231-87613232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs147683974	chr15:87613308-87613309	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs373677274	chr15:87613321-87613322	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs191310952	chr15:87613441-87613442	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs184407718	chr15:87613463-87613464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs150356890	chr15:87613471-87613472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16774939	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Breast cancer	21364760	CNVD
Cancer	21129771	CNVD
Myelofibrosis	22110671	CNVD
Spondylocostal dysostosis	21085971	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Epilepsy	19486360	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	17237825	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Acute myeloid leukemia	20962326	CNVD

Chromatin state (count:163 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:87609800-87633000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:87615000-87616000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:87615000-87616600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr15:87615000-87617200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:87615400-87615800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:87615800-87616200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:87616200-87616800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr15:87633000-87633200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr15:87635000-87635200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:87642800-87643800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:87642800-87643800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:87642800-87643800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:87642800-87643800	Enhancers	HMEC	breast
14	chr15:87643200-87644000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:87644000-87649400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:87647600-87647800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr15:87647600-87648000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:87657400-87657800	Enhancers	Esophagus	oesophagus
19	chr15:87660800-87662000	Enhancers	Brain Substantia Nigra	brain
20	chr15:87661000-87661600	Enhancers	Stomach Smooth Muscle	stomach
21	chr15:87661000-87662200	Enhancers	Fetal Brain Male	brain
22	chr15:87661400-87661800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr15:87661400-87662400	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr15:87661600-87662000	Enhancers	Fetal Stomach	stomach
25	chr15:87661600-87662200	Enhancers	Brain Angular Gyrus	brain
26	chr15:87661800-87662400	Enhancers	Fetal Muscle Leg	muscle
27	chr15:87662000-87662400	Enhancers	Brain Hippocampus Middle	brain
28	chr15:87662000-87663200	Weak transcription	Brain Substantia Nigra	brain
29	chr15:87662200-87662600	Weak transcription	Fetal Brain Male	brain
30	chr15:87662400-87663200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr15:87662600-87663200	Enhancers	Fetal Brain Male	brain
32	chr15:87663200-87663400	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr15:87663200-87663400	Enhancers	Brain Substantia Nigra	brain
34	chr15:87663800-87664200	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr15:87665600-87667800	Enhancers	Brain Germinal Matrix	brain
36	chr15:87667800-87684400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr15:87673000-87673800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr15:87673200-87673800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr15:87673200-87673800	Enhancers	HMEC	breast
40	chr15:87679400-87679800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:87684000-87684400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr15:87684400-87685400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr15:87685400-87686000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr15:87686000-87686200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr15:87687600-87689000	Enhancers	NH-A	brain
46	chr15:87687800-87688600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr15:87688200-87689400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr15:87688600-87689600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr15:87689600-87689800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr15:87695400-87695800	Enhancers	Fetal Lung	lung

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