Variant report

Variant	nsv429763
Chromosome Location	chr7:63824928-63840770
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:63810767..63813446-chr7:63828000..63830208,2	K562	blood:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF736-1	chr7:63832408-63832491	XLOC_006123
2	lnc-ZNF736-1	chr7:63831907-63831978	XLOC_006123
3	lnc-ZNF736-1	chr7:63832408-63832491	XLOC_006123
4	lnc-ZNF736-1	chr7:63834945-63835338	XLOC_006123
5	lnc-ZNF736-1	chr7:63832148-63832189	XLOC_006123
6	lnc-ZNF736-1	chr7:63834945-63835338	XLOC_006123
7	lnc-ZNF736-2	chr7:63834825-63834944	XLOC_006124

No data

Variant related genes	Relation type
RAB5C	miRNA target sites
CDV3	miRNA target sites
CDX2	miRNA target sites

Extended variants
information (count: 281 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:281 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2127047	chr7:63824928-63824929	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs185841984	chr7:63825009-63825010	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs540299455	chr7:63825024-63825025	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs559925698	chr7:63825064-63825065	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs532112560	chr7:63825095-63825096	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs552524630	chr7:63825117-63825118	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs35339076	chr7:63825119-63825120	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs199705575	chr7:63825127-63825128	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs540163791	chr7:63825139-63825140	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs57138920	chr7:63825144-63825145	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs116285758	chr7:63825154-63825155	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs554060207	chr7:63825172-63825173	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs370630398	chr7:63825182-63825183	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs57782404	chr7:63825190-63825191	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs568244058	chr7:63825191-63825192	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs534062036	chr7:63825198-63825199	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs73135657	chr7:63825245-63825246	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs570778167	chr7:63825281-63825282	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs190114038	chr7:63825292-63825293	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs146688100	chr7:63825293-63825294	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs374233539	chr7:63825296-63825297	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs535741027	chr7:63825310-63825311	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs80247923	chr7:63825346-63825347	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs180951809	chr7:63825384-63825385	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs4377837	chr7:63825391-63825392	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs539965963	chr7:63825400-63825401	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs185769145	chr7:63825412-63825413	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs576913597	chr7:63825430-63825431	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs545777277	chr7:63825482-63825483	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs588162	chr7:63825537-63825538	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
31	rs192331298	chr7:63825542-63825543	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs531684293	chr7:63825559-63825560	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs562656965	chr7:63825635-63825636	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs561768879	chr7:63825656-63825657	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs376730670	chr7:63825792-63825793	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs117968290	chr7:63825829-63825830	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs35530434	chr7:63825858-63825859	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs531870112	chr7:63825979-63825980	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs547576850	chr7:63826030-63826031	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs556702871	chr7:63826067-63826068	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs570570394	chr7:63826068-63826069	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs184063517	chr7:63826075-63826076	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs549810680	chr7:63826098-63826099	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs142917418	chr7:63826144-63826145	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs10261058	chr7:63826209-63826210	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs555989083	chr7:63826219-63826220	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs566166004	chr7:63826230-63826231	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs535175866	chr7:63826271-63826272	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs682516	chr7:63826299-63826300	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs577056734	chr7:63826322-63826323	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Glioblastoma	21080181	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Astrocytoma	22246337	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Acute monocytic leukemia	16498392	CNVD
Prostate cancer	16461572	CNVD
Salivary gland tumor	18059337	CNVD
Multiple myeloma	17550852	CNVD
Acute myeloid leukemia	21251322	CNVD
small cell lung cancer	20016488	CNVD
Bladder cancer	21909424	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:63790200-63826600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:63822600-63825000	ZNF genes & repeats	Liver	Liver
3	chr7:63828600-63834600	Weak transcription	Fetal Heart	heart
4	chr7:63830000-63830200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links