Variant report

Variant	nsv432918
Chromosome Location	chr6:68800279-68837679
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:42)
LncRNA
region (count:10)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:42 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:68803434..68805990-chr6:68811152..68813143,2	K562	blood:
2	chr6:68803434..68805990-chr6:68811152..68813143,2	K562	blood:
3	chr6:68789973..68792269-chr6:68803730..68805986,2	K562	blood:
4	chr6:68597580..68600417-chr6:68819020..68821104,3	K562	blood:
5	chr6:68592593..68594267-chr6:68808753..68811360,2	K562	blood:
6	chr17:63115166..63117706-chr6:68802720..68805491,2	MCF-7	breast:
7	chr6:68809125..68811478-chr6:68818545..68820354,2	K562	blood:
8	chr6:68795630..68800663-chr6:68801094..68806773,6	K562	blood:
9	chr6:68591392..68593317-chr6:68835997..68837691,2	K562	blood:
10	chr6:68811836..68814787-chr6:68816919..68818576,2	K562	blood:
11	chr6:68798322..68801928-chr6:68802976..68805432,3	MCF-7	breast:
12	chr6:68805319..68808315-chr6:68808520..68811451,3	K562	blood:
13	chr6:68814415..68815986-chr6:71103612..71106023,2	K562	blood:
14	chr6:68805319..68808315-chr6:68808520..68811451,3	K562	blood:
15	chr6:68798322..68801928-chr6:68802976..68805432,3	MCF-7	breast:
16	chr6:68805600..68808347-chr6:68819219..68821980,2	K562	blood:
17	chr6:68596944..68599377-chr6:68803324..68805974,4	K562	blood:
18	chr6:68833895..68835853-chr6:68842387..68844997,2	K562	blood:
19	chr6:68828507..68832078-chr6:68836054..68840221,3	K562	blood:
20	chr6:68825038..68827544-chr6:68829705..68832097,2	K562	blood:
21	chr6:68595545..68597855-chr6:68811706..68813567,2	K562	blood:
22	chr6:68828507..68832078-chr6:68836054..68840221,3	K562	blood:
23	chr6:68775688..68778235-chr6:68827459..68829005,2	K562	blood:
24	chr6:68587589..68589412-chr6:68801238..68803504,2	K562	blood:
25	chr6:68825038..68827544-chr6:68829705..68832097,2	K562	blood:
26	chr6:68819621..68823464-chr6:68824435..68828347,5	K562	blood:
27	chr6:68819621..68823464-chr6:68824435..68828347,5	K562	blood:
28	chr6:68825038..68827544-chr6:68828235..68832097,3	K562	blood:
29	chr6:68807300..68809368-chr6:68810188..68812717,2	MCF-7	breast:
30	chr6:68805183..68807758-chr6:68934984..68937347,2	K562	blood:
31	chr6:68753902..68755847-chr6:68816802..68819740,2	K562	blood:
32	chr6:68811836..68814787-chr6:68816919..68818576,2	K562	blood:
33	chr6:68804883..68806999-chr6:68874743..68876484,2	K562	blood:
34	chr6:68596523..68599327-chr6:68829141..68831261,2	K562	blood:
35	chr6:68771352..68773170-chr6:68818495..68820694,2	K562	blood:
36	chr6:68598525..68600337-chr6:68807420..68809409,2	K562	blood:
37	chr6:68793389..68796091-chr6:68814885..68817046,2	K562	blood:
38	chr6:68807300..68809368-chr6:68810188..68812717,2	MCF-7	breast:
39	chr6:68805600..68808347-chr6:68819219..68821980,2	K562	blood:
40	chr6:68795630..68800663-chr6:68801094..68806773,6	K562	blood:
41	chr6:68825038..68827544-chr6:68828235..68832097,3	K562	blood:
42	chr6:68809125..68811478-chr6:68818545..68820354,2	K562	blood:

(count:10 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BAI3-2	chr6:68801741-68802026	XLOC_005339
2	lnc-BAI3-6	chr6:68826709-68827115	NONHSAT113401
3	lnc-BAI3-2	chr6:68819840-68819883	XLOC_005339
4	lnc-BAI3-2	chr6:68801513-68803739	NONHSAT113395
5	lnc-BAI3-2	chr6:68801741-68802066	XLOC_005339
6	lnc-BAI3-6	chr6:68821942-68822048	l_3200_chr6:68807227-68855932_testes
7	lnc-BAI3-6	chr6:68807228-68807554	l_3200_chr6:68807227-68855932_testes
8	lnc-BAI3-2	chr6:68819839-68819883	NONHSAT113395
9	lnc-BAI3-6	chr6:68821964-68822048	NONHSAT113401
10	lnc-BAI3-6	chr6:68826709-68827134	l_3200_chr6:68807227-68855932_testes

No data

Variant related genes	Relation type
ENSG00000227706	chromatin interactions
ENSG00000237643	chromatin interactions
IPO7	miRNA target sites
KIF5C	miRNA target sites

Extended variants
information (count: 1295 )
Associated
traits (count: 80 )

Variant overlapped rSNPs/rCNVs (count:1295 , 50 per page) page: 1 2 3 4 5 6 7 ... 26

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs185006074	chr6:68800292-68800293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs534639172	chr6:68800295-68800296	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs554230579	chr6:68800327-68800328	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs564330876	chr6:68800351-68800352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs536772338	chr6:68800367-68800368	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs549996938	chr6:68800393-68800394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs557087695	chr6:68800439-68800440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs373815658	chr6:68800470-68800471	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs7753361	chr6:68800495-68800496	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs146874149	chr6:68800500-68800501	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs370540417	chr6:68800503-68800504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs112707614	chr6:68800504-68800505	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs374213254	chr6:68800604-68800605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs182497589	chr6:68800651-68800652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs72896394	chr6:68800734-68800735	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs143235395	chr6:68800740-68800741	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs539861543	chr6:68800749-68800750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs11752887	chr6:68800783-68800784	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs561154911	chr6:68800799-68800800	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs201655017	chr6:68800803-68800804	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs530103364	chr6:68800804-68800805	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs376964530	chr6:68800805-68800806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs112472640	chr6:68800806-68800807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs533061215	chr6:68800807-68800808	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs9454425	chr6:68800808-68800809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs376700358	chr6:68800810-68800811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs143701242	chr6:68800824-68800825	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs576635999	chr6:68800833-68800834	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs398049069	chr6:68800835-68800836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs61368407	chr6:68800837-68800838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs9354668	chr6:68800839-68800840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs2061116	chr6:68800874-68800875	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs7740369	chr6:68800911-68800912	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs34622257	chr6:68800938-68800939	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs552327133	chr6:68800939-68800940	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs367891162	chr6:68800941-68800942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs373091457	chr6:68800942-68800943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs191646772	chr6:68800967-68800968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs375996009	chr6:68801013-68801014	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs541770764	chr6:68801040-68801041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs528814794	chr6:68801101-68801102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs548840308	chr6:68801115-68801116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs568008683	chr6:68801203-68801204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs537032888	chr6:68801208-68801209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs371315301	chr6:68801213-68801214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs570515877	chr6:68801242-68801243	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs539666042	chr6:68801268-68801269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs371967659	chr6:68801309-68801310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs148309003	chr6:68801314-68801315	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs543300214	chr6:68801323-68801324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:80)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	20164919	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:68798600-68803400	Weak transcription	GM12878-XiMat	blood
2	chr6:68799600-68807400	Weak transcription	K562	blood
3	chr6:68803400-68804000	Enhancers	GM12878-XiMat	blood
4	chr6:68804000-68804400	Weak transcription	GM12878-XiMat	blood
5	chr6:68804400-68804600	Active TSS	GM12878-XiMat	blood
6	chr6:68804600-68805200	Weak transcription	GM12878-XiMat	blood
7	chr6:68805200-68805400	Enhancers	GM12878-XiMat	blood
8	chr6:68812800-68818200	Weak transcription	K562	blood
9	chr6:68817800-68818200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:68817800-68818200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:68817800-68818200	Enhancers	GM12878-XiMat	blood
12	chr6:68817800-68818400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:68817800-68818600	Enhancers	NH-A	brain
14	chr6:68818000-68818600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr6:68818200-68818400	Flanking Active TSS	GM12878-XiMat	blood
16	chr6:68818200-68818600	Flanking Active TSS	K562	blood
17	chr6:68818200-68825600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:68818400-68818600	Active TSS	GM12878-XiMat	blood
19	chr6:68818600-68818800	Enhancers	K562	blood
20	chr6:68818800-68819200	Weak transcription	K562	blood
21	chr6:68819200-68819600	Enhancers	K562	blood
22	chr6:68825600-68825800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:68828000-68831600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:68831200-68832200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:68831400-68832400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:68831600-68831800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:68831600-68832000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:68831600-68832200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:68831800-68832400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr6:68832400-68833200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr6:68833400-68843600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:68836600-68837400	Enhancers	GM12878-XiMat	blood
33	chr6:68837000-68837800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:68837400-68837800	Active TSS	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links