Variant report

Variant	nsv432937
Chromosome Location	chr6:82155881-82161081
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 227 )
Associated
traits (count: 103 )

Variant overlapped rSNPs/rCNVs (count:227 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs187297819	chr6:82155895-82155896	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs149438684	chr6:82155934-82155935	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs191736069	chr6:82155967-82155968	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs73751442	chr6:82155970-82155971	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs541736473	chr6:82155988-82155989	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs555114433	chr6:82156018-82156019	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs572206978	chr6:82156045-82156046	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs540327022	chr6:82156051-82156052	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs540617138	chr6:82156056-82156057	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs187122761	chr6:82156112-82156113	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs532382461	chr6:82156122-82156123	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs546216002	chr6:82156125-82156126	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs190427771	chr6:82156154-82156155	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs76995072	chr6:82156223-82156224	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs182689617	chr6:82156235-82156236	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs186632696	chr6:82156263-82156264	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs527926484	chr6:82156280-82156281	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs565295801	chr6:82156288-82156289	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs374277631	chr6:82156291-82156292	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs144852034	chr6:82156304-82156305	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs544302524	chr6:82156306-82156307	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs570554164	chr6:82156307-82156308	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs16893157	chr6:82156316-82156317	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs555705133	chr6:82156419-82156420	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs569331993	chr6:82156460-82156461	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs58348892	chr6:82156556-82156557	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs192409348	chr6:82156596-82156597	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs185600913	chr6:82156614-82156615	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs541264837	chr6:82156643-82156644	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs188919377	chr6:82156668-82156669	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs577236483	chr6:82156698-82156699	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs546343714	chr6:82156717-82156718	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs562827385	chr6:82156753-82156754	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs193098849	chr6:82156786-82156787	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs563355071	chr6:82156789-82156790	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs542532417	chr6:82156790-82156791	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs562452405	chr6:82156799-82156800	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs184511418	chr6:82156807-82156808	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs372504060	chr6:82156810-82156811	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs79750435	chr6:82156842-82156843	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs369137726	chr6:82156857-82156858	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs533016364	chr6:82156862-82156863	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs549467166	chr6:82156869-82156870	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs569266451	chr6:82156928-82156929	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs548898747	chr6:82156943-82156944	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs373527402	chr6:82156974-82156975	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs498482	chr6:82156988-82156989	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs75569993	chr6:82157018-82157019	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs537209204	chr6:82157092-82157093	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs555237065	chr6:82157099-82157100	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:103)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	20164919	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82154800-82157800	Enhancers	Stomach Mucosa	stomach
2	chr6:82155000-82156400	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr6:82156400-82156800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:82156800-82157000	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr6:82157000-82159600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:82157800-82160000	Weak transcription	Stomach Mucosa	stomach
7	chr6:82159000-82159400	Enhancers	Hela-S3	cervix
8	chr6:82159200-82162400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr6:82159400-82159800	Weak transcription	Hela-S3	cervix
10	chr6:82159400-82162000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:82159600-82160800	Enhancers	Osteobl	bone
12	chr6:82159600-82162000	Enhancers	NHDF-Ad	bronchial
13	chr6:82159600-82162200	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr6:82159800-82160400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr6:82159800-82162400	Enhancers	Hela-S3	cervix
16	chr6:82160000-82160200	Enhancers	Stomach Mucosa	stomach
17	chr6:82160000-82160400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:82160000-82160400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:82160000-82160400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:82160000-82160400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:82160000-82160400	Enhancers	NHLF	lung
22	chr6:82160000-82160600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:82160000-82161600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:82160000-82161600	Enhancers	Left Ventricle	heart
25	chr6:82160000-82162000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:82160200-82160400	Enhancers	Fetal Heart	heart
27	chr6:82160200-82160400	Enhancers	NH-A	brain
28	chr6:82160200-82160600	Weak transcription	Stomach Mucosa	stomach
29	chr6:82160400-82161400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:82160400-82161400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:82160400-82161400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr6:82160400-82161400	Weak transcription	NH-A	brain
33	chr6:82160400-82161400	Weak transcription	NHLF	lung
34	chr6:82160400-82161600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:82160600-82162200	Enhancers	Stomach Mucosa	stomach
36	chr6:82160800-82161200	Weak transcription	Osteobl	bone
37	chr6:82160800-82161800	Weak transcription	Fetal Heart	heart
38	chr6:82160800-82163000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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