Variant report

Variant	nsv433446
Chromosome Location	chr16:35204644-35284399
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8913 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:8913 , 50 per page) page: 1 2 3 4 5 6 7 ... 179

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11641027	chr16:35204644-35204645	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs559690390	chr16:35204664-35204665	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs189595886	chr16:35204675-35204676	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs201223769	chr16:35204677-35204678	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs199731546	chr16:35204690-35204691	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs200675942	chr16:35204708-35204709	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs533223418	chr16:35204710-35204711	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs180794599	chr16:35204715-35204716	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs371604159	chr16:35204727-35204728	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs75687570	chr16:35204732-35204733	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs373209728	chr16:35204739-35204740	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs181260146	chr16:35204750-35204751	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs77326071	chr16:35204832-35204833	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs563322752	chr16:35204852-35204853	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs530409249	chr16:35204863-35204864	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs549077926	chr16:35204892-35204893	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs140156707	chr16:35204903-35204904	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs529446072	chr16:35204943-35204944	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs111555775	chr16:35204972-35204973	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs547541761	chr16:35204987-35204988	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs146843763	chr16:35205002-35205003	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs539789067	chr16:35205004-35205005	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs139723232	chr16:35205018-35205019	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs570068656	chr16:35205025-35205026	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs553201786	chr16:35205089-35205090	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs35380106	chr16:35205100-35205101	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs200825268	chr16:35205128-35205129	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs77828509	chr16:35205142-35205143	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs537019455	chr16:35205149-35205150	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs373058226	chr16:35205157-35205158	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs80166206	chr16:35205160-35205161	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs79180946	chr16:35205163-35205164	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs79535534	chr16:35205165-35205166	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs80351757	chr16:35205166-35205167	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs142858055	chr16:35205173-35205174	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs201810793	chr16:35205200-35205201	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs151055036	chr16:35205244-35205245	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs542056446	chr16:35205245-35205246	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs74575302	chr16:35205246-35205247	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs185327117	chr16:35205288-35205289	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs186766530	chr16:35205307-35205308	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs200869876	chr16:35205308-35205309	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs77536398	chr16:35205318-35205319	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs80242502	chr16:35205323-35205324	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs118164364	chr16:35205330-35205331	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs577888395	chr16:35205353-35205354	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs545318387	chr16:35205363-35205364	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs113575806	chr16:35205364-35205365	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs374001147	chr16:35205371-35205372	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs563399505	chr16:35205382-35205383	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Autism	22566537	CNVD
Intellectual disability	22566537	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Ductal carcinoma	22052326	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Benign familial neonatal-infantile seizures	21060786	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Cancer	21183584	CNVD
Disorders of sex development	21048976	CNVD
Low-grade fibromyxoid sarcoma	21536545	CNVD
Breast cancer	21045282	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164920	CNVD
Renal cell carcinoma	18194544	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD

Chromatin state (count:538 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:35200800-35208600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr16:35201200-35213200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr16:35201600-35205800	Weak transcription	NH-A	brain
4	chr16:35203600-35205800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr16:35205600-35208600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
6	chr16:35205600-35209200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
7	chr16:35205600-35221200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr16:35205800-35206000	Flanking Bivalent TSS/Enh	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr16:35205800-35206000	ZNF genes & repeats	Small Intestine	intestine
10	chr16:35205800-35206200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
11	chr16:35205800-35206200	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
12	chr16:35205800-35206200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr16:35205800-35206200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
14	chr16:35205800-35206200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr16:35205800-35206200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
16	chr16:35205800-35206200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
17	chr16:35205800-35206200	ZNF genes & repeats	Brain Substantia Nigra	brain
18	chr16:35205800-35206200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
19	chr16:35205800-35206200	ZNF genes & repeats	Fetal Lung	lung
20	chr16:35205800-35206200	ZNF genes & repeats	HUVEC	blood vessel
21	chr16:35205800-35206200	ZNF genes & repeats	NH-A	brain
22	chr16:35205800-35206400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
23	chr16:35205800-35212200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
24	chr16:35206000-35206200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr16:35206000-35206200	ZNF genes & repeats	HepG2	liver
26	chr16:35206200-35215800	Weak transcription	NH-A	brain
27	chr16:35207400-35208400	ZNF genes & repeats	Adipose Nuclei	Adipose
28	chr16:35208600-35210800	ZNF genes & repeats	Liver	Liver
29	chr16:35210400-35210600	ZNF genes & repeats	Brain Angular Gyrus	brain
30	chr16:35210800-35211600	Weak transcription	Liver	Liver
31	chr16:35211600-35213800	ZNF genes & repeats	Liver	Liver
32	chr16:35211600-35221200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
33	chr16:35213200-35213600	Active TSS	Aorta	Aorta
34	chr16:35213400-35213600	ZNF genes & repeats	Left Ventricle	heart
35	chr16:35213400-35215800	Weak transcription	Small Intestine	intestine
36	chr16:35213600-35215800	Weak transcription	Aorta	Aorta
37	chr16:35213600-35215800	Weak transcription	Left Ventricle	heart
38	chr16:35214000-35215600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr16:35214400-35216600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
40	chr16:35214400-35220600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
41	chr16:35215400-35216200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
42	chr16:35215400-35216400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr16:35215600-35216200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr16:35215800-35216000	Bivalent/Poised TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr16:35215800-35216000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr16:35215800-35216000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr16:35215800-35216000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
48	chr16:35215800-35216000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr16:35215800-35216000	Flanking Active TSS	Aorta	Aorta
50	chr16:35215800-35216200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

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