Variant report

Variant	nsv433510
Chromosome Location	chr10:57279153-57290728
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:57283681..57286527-chr10:57289887..57292236,2	K562	blood:
2	chr10:57283681..57286527-chr10:57289887..57292236,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 62 )

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2184372	chr10:57279153-57279154	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs546483615	chr10:57279171-57279172	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs187711446	chr10:57279178-57279179	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs564388921	chr10:57279224-57279225	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs73253106	chr10:57279226-57279227	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs571287940	chr10:57279288-57279289	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs537128116	chr10:57279321-57279322	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs76555453	chr10:57279347-57279348	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs570254146	chr10:57279354-57279355	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs536018507	chr10:57279382-57279383	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs142008253	chr10:57279383-57279384	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs531999209	chr10:57279475-57279476	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs572752108	chr10:57279477-57279478	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs183671509	chr10:57279480-57279481	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs71014499	chr10:57279496-57279497	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs398013550	chr10:57279505-57279506	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs369281052	chr10:57286403-57286404	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs562074244	chr10:57286440-57286441	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs556912074	chr10:57286527-57286528	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs143171173	chr10:57286528-57286529	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs542664849	chr10:57286533-57286534	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs542270638	chr10:57286550-57286551	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs530718809	chr10:57286563-57286564	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs572486818	chr10:57286568-57286569	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs201926545	chr10:57286599-57286600	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs79660243	chr10:57286606-57286607	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs532967253	chr10:57286627-57286628	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs375639895	chr10:57286642-57286643	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs563273894	chr10:57286651-57286652	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs545913459	chr10:57286677-57286678	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs181212919	chr10:57286678-57286679	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs548746768	chr10:57286720-57286721	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs565668750	chr10:57286722-57286723	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs186265775	chr10:57286817-57286818	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs551465510	chr10:57286820-57286821	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs571331569	chr10:57286865-57286866	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs540060877	chr10:57286867-57286868	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs373337600	chr10:57286886-57286887	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs556773210	chr10:57286913-57286914	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs147512742	chr10:57286939-57286940	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs148521797	chr10:57286940-57286941	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs564315384	chr10:57286960-57286961	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs555523461	chr10:57286962-57286963	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:62)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	20858243	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	20164919	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:57278200-57279200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:57278200-57279600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr10:57278800-57279400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr10:57279200-57279600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr10:57286400-57287000	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links