Variant report

Variant	nsv433513
Chromosome Location	chr10:98970664-98976923
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:98832312..98833311-chr10:98969943..98970883,4	MCF-7	breast:
2	chr10:98833592..98834496-chr10:98970236..98971005,2	K562	blood:
3	chr10:98832347..98833305-chr10:98969570..98970861,6	MCF-7	breast:
4	chr10:98832501..98833370-chr10:98969951..98970951,5	K562	blood:
5	chr10:98970157..98971031-chr10:99114717..99115659,2	MCF-7	breast:
6	chr10:98877113..98877837-chr10:98970293..98970909,2	MCF-7	breast:
7	chr10:98859426..98860138-chr10:98970400..98970959,2	K562	blood:
8	chr10:98970315..98970824-chr10:98993860..98994647,2	MCF-7	breast:
9	chr10:98972014..98974656-chr10:98980625..98982181,2	K562	blood:
10	chr10:98869547..98870254-chr10:98969992..98970708,2	MCF-7	breast:
11	chr10:98841084..98842088-chr10:98969940..98970900,4	MCF-7	breast:
12	chr10:98976025..98978892-chr10:98984824..98987620,2	K562	blood:
13	chr10:98796818..98797761-chr10:98969942..98970829,2	K562	blood:
14	chr10:98975935..98978819-chr10:98980650..98983616,2	K562	blood:
15	chr10:98897585..98899016-chr10:98969998..98971139,5	MCF-7	breast:
16	chr10:98970361..98971335-chr10:98994318..98994830,2	K562	blood:
17	chr10:98897666..98898578-chr10:98969950..98970807,6	MCF-7	breast:
18	chr10:98797178..98797761-chr10:98970351..98971056,2	MCF-7	breast:

No data

Extended variants
information (count: 271 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:271 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1147598	chr10:98970664-98970665	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs574344146	chr10:98970668-98970669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs541850055	chr10:98970683-98970684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs560162835	chr10:98970690-98970691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs143543647	chr10:98970699-98970700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs147153441	chr10:98970711-98970712	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs564336511	chr10:98970717-98970718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs183499985	chr10:98970742-98970743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs140130587	chr10:98970785-98970786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs549905933	chr10:98970834-98970835	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs188102219	chr10:98970845-98970846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs377408822	chr10:98970846-98970847	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs369258919	chr10:98970853-98970854	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs192717252	chr10:98970877-98970878	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs547403369	chr10:98970886-98970887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs565721220	chr10:98970905-98970906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs1253426	chr10:98970910-98970911	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs570272773	chr10:98970911-98970912	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs184155743	chr10:98970918-98970919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs1253425	chr10:98971025-98971026	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
21	rs574407902	chr10:98971056-98971057	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs556855930	chr10:98971058-98971059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs553840139	chr10:98971095-98971096	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs1253424	chr10:98971124-98971125	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs140778073	chr10:98971211-98971212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs545932723	chr10:98971225-98971226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs535849151	chr10:98971229-98971230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs373313458	chr10:98971237-98971238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs564034069	chr10:98971243-98971244	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs115974562	chr10:98971244-98971245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs377714849	chr10:98971252-98971253	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs543232384	chr10:98971256-98971257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs561508260	chr10:98971274-98971275	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs375963352	chr10:98971351-98971352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs529185272	chr10:98971411-98971412	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs371355333	chr10:98971426-98971427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs368995398	chr10:98971501-98971502	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs1809706	chr10:98971552-98971553	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs572595529	chr10:98971582-98971583	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs544822370	chr10:98971602-98971603	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs186620101	chr10:98971612-98971613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs537525025	chr10:98971644-98971645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs549615042	chr10:98971648-98971649	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs567847637	chr10:98971655-98971656	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs564007966	chr10:98971679-98971680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs191416627	chr10:98971703-98971704	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs572050021	chr10:98971704-98971705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs374207439	chr10:98971717-98971718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs539063671	chr10:98971728-98971729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs144407856	chr10:98971736-98971737	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16608533	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16912164	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Autosomal dominant partial epilepsy	18472482	CNVD
Breast cancer	16397240	CNVD
Myxofibrosarcoma	16751306	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Breast cancer	22522925	CNVD
Ependymoma	20639864	CNVD
Lung adenocarcinoma	21935476	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98956600-98976000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:98968000-98977600	Weak transcription	GM12878-XiMat	blood
3	chr10:98968000-98979000	Weak transcription	Fetal Thymus	thymus
4	chr10:98968000-98982200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr10:98968000-98982600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:98968200-98980600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:98970400-98974400	Weak transcription	Fetal Brain Male	brain
8	chr10:98970400-98982000	Weak transcription	Fetal Kidney	kidney
9	chr10:98970800-98982200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:98971200-98981400	Weak transcription	Fetal Muscle Leg	muscle
11	chr10:98971800-98982400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr10:98972400-98988400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:98973000-98973800	Enhancers	HepG2	liver
14	chr10:98973200-98981400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr10:98973400-98980200	Weak transcription	Fetal Intestine Small	intestine
16	chr10:98973400-98981400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:98973800-98979600	Weak transcription	Thymus	Thymus
18	chr10:98973800-99019000	Weak transcription	HepG2	liver
19	chr10:98974000-98982600	Weak transcription	Esophagus	oesophagus
20	chr10:98974000-98986200	Weak transcription	Pancreas	Pancrea
21	chr10:98974400-98974600	Enhancers	Fetal Brain Male	brain
22	chr10:98974600-98977800	Weak transcription	Primary B cells from cord blood	blood
23	chr10:98975200-98981400	Weak transcription	Spleen	Spleen
24	chr10:98975400-98975600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:98975400-98981000	Weak transcription	Fetal Stomach	stomach
26	chr10:98975600-98981800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:98975800-98982200	Weak transcription	Ovary	ovary
28	chr10:98976000-99011400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr10:98976200-98979200	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr10:98976400-98978600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:98976400-98980400	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr10:98976400-98988200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:98976600-98977600	Enhancers	HUVEC	blood vessel
34	chr10:98976600-98977600	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr10:98976600-98978600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr10:98976800-98977000	Enhancers	Primary hematopoietic stem cells	blood
37	chr10:98976800-98988200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links