Variant report

Variant	nsv435733
Chromosome Location	chr20:26299611-26310106
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1580 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:1580 , 50 per page) page: 1 2 3 4 5 6 7 ... 32

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs77803504	chr20:26299645-26299646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs76550011	chr20:26299646-26299647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs373560463	chr20:26299647-26299648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs374734883	chr20:26299648-26299649	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs148713529	chr20:26299652-26299653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs75676191	chr20:26299654-26299655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs146952715	chr20:26299656-26299657	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs79537865	chr20:26299662-26299663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs77164454	chr20:26299663-26299664	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs75012750	chr20:26299665-26299666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs150987544	chr20:26299668-26299669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs138493504	chr20:26299669-26299670	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs141445238	chr20:26299670-26299671	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs369016409	chr20:26299675-26299676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs373300710	chr20:26299676-26299677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs56191452	chr20:26299677-26299678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs73602626	chr20:26299678-26299679	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs376550710	chr20:26299683-26299684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs528079206	chr20:26299686-26299687	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs75206795	chr20:26299687-26299688	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs200076419	chr20:26299690-26299691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs369679773	chr20:26299696-26299697	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs77771346	chr20:26299698-26299699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs373172530	chr20:26299700-26299701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs377681553	chr20:26299703-26299704	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs371256822	chr20:26299710-26299711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs571271725	chr20:26299719-26299720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs201375246	chr20:26299732-26299733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs536723186	chr20:26299734-26299735	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs36183676	chr20:26299736-26299737	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs549992988	chr20:26299770-26299771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs200170912	chr20:26299771-26299772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs200886015	chr20:26299772-26299773	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs373271456	chr20:26299817-26299818	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs374920655	chr20:26299822-26299823	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs111754970	chr20:26299823-26299824	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs4033396	chr20:26299834-26299835	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs200224914	chr20:26299839-26299840	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs201346608	chr20:26299841-26299842	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs569901774	chr20:26299849-26299850	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs369158980	chr20:26299851-26299852	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs535788972	chr20:26299882-26299883	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs200046124	chr20:26299893-26299894	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs562721560	chr20:26299915-26299916	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs202154019	chr20:26299919-26299920	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs577788892	chr20:26299922-26299923	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs555786547	chr20:26299923-26299924	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs545598263	chr20:26299924-26299925	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs572656057	chr20:26299938-26299939	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs77669875	chr20:26299940-26299941	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD

Chromatin state (count:154 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:26293800-26300000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr20:26293800-26300000	Weak transcription	Colon Smooth Muscle	Colon
3	chr20:26293800-26300000	Weak transcription	Fetal Kidney	kidney
4	chr20:26293800-26300000	Weak transcription	Left Ventricle	heart
5	chr20:26293800-26304400	Weak transcription	NH-A	brain
6	chr20:26293800-26309600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr20:26294000-26300000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr20:26297000-26301200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr20:26298200-26309600	Weak transcription	K562	blood
10	chr20:26299600-26300000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr20:26299800-26300400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
12	chr20:26299800-26300400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
13	chr20:26300000-26300200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
14	chr20:26300000-26300200	ZNF genes & repeats	Fetal Kidney	kidney
15	chr20:26300000-26300200	ZNF genes & repeats	Left Ventricle	heart
16	chr20:26300000-26300400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
17	chr20:26300000-26300400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
18	chr20:26300000-26300400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
19	chr20:26300000-26300400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr20:26300000-26300400	ZNF genes & repeats	Liver	Liver
21	chr20:26300000-26300400	ZNF genes & repeats	Brain Hippocampus Middle	brain
22	chr20:26300000-26300400	ZNF genes & repeats	Colon Smooth Muscle	Colon
23	chr20:26300000-26300400	Active TSS	Psoas Muscle	Psoas
24	chr20:26300000-26301400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
25	chr20:26300200-26301000	Weak transcription	Fetal Kidney	kidney
26	chr20:26300400-26302600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr20:26301200-26301400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr20:26301200-26301400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
29	chr20:26301200-26301400	ZNF genes & repeats	Fetal Kidney	kidney
30	chr20:26301200-26301600	ZNF genes & repeats	HUVEC	blood vessel
31	chr20:26301400-26302600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr20:26302400-26302600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
33	chr20:26302400-26303000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr20:26302600-26303000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
35	chr20:26302600-26303000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
36	chr20:26302600-26303000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr20:26302600-26303000	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
38	chr20:26302600-26303000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr20:26302600-26303000	ZNF genes & repeats	Brain Substantia Nigra	brain
40	chr20:26302600-26303000	ZNF genes & repeats	Colonic Mucosa	Colon
41	chr20:26302800-26303000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
42	chr20:26303000-26304000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr20:26303000-26306800	Weak transcription	Brain Substantia Nigra	brain
44	chr20:26303000-26308800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr20:26303000-26308800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr20:26303000-26308800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr20:26303000-26308800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr20:26303000-26308800	Weak transcription	Colonic Mucosa	Colon
49	chr20:26304000-26306200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr20:26304000-26308800	Weak transcription	HSMMtube	muscle

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