Variant report

Variant	nsv436380
Chromosome Location	chr3:163909097-163912649
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 152 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:152 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs549745	chr3:163909126-163909127	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs139523341	chr3:163909144-163909145	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs544305415	chr3:163909204-163909205	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs149713651	chr3:163909231-163909232	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs74585611	chr3:163909270-163909271	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs372779182	chr3:163909278-163909279	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs145583348	chr3:163909334-163909335	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs188599830	chr3:163909365-163909366	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs139760056	chr3:163909442-163909443	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs567483071	chr3:163909460-163909461	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs145322314	chr3:163909465-163909466	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs531392594	chr3:163909495-163909496	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs16847815	chr3:163909515-163909516	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs147642709	chr3:163909546-163909547	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs788894	chr3:163909559-163909560	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs788893	chr3:163909582-163909583	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs549549827	chr3:163909630-163909631	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs141504167	chr3:163909654-163909655	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs140672213	chr3:163909686-163909687	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs376512832	chr3:163909738-163909739	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs192738506	chr3:163909754-163909755	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs537942462	chr3:163909772-163909773	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs76132218	chr3:163909815-163909816	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs116049316	chr3:163909830-163909831	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs540855883	chr3:163909857-163909858	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs560537803	chr3:163909924-163909925	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs114540970	chr3:163909937-163909938	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs788892	chr3:163909947-163909948	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
29	rs562457669	chr3:163909948-163909949	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs147041132	chr3:163909953-163909954	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs151056355	chr3:163909964-163909965	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs565023817	chr3:163909965-163909966	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs141004371	chr3:163909991-163909992	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs547539884	chr3:163910008-163910009	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs567350043	chr3:163910022-163910023	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs150240466	chr3:163910060-163910061	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs640736	chr3:163910070-163910071	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs138912216	chr3:163910075-163910076	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs145702262	chr3:163910079-163910080	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs114903741	chr3:163910083-163910084	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs386667821	chr3:163910089-163910090	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs56375007	chr3:163910091-163910092	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs1321543	chr3:163910095-163910096	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs142242486	chr3:163910097-163910098	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs541256221	chr3:163910107-163910108	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs73154430	chr3:163910119-163910120	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs533689559	chr3:163910180-163910181	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs138484761	chr3:163910265-163910266	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs576499602	chr3:163910272-163910273	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs142315643	chr3:163910282-163910283	Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	21115979	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	16608533	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-small cell lung cancer	19010865	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16547154	CNVD
Breast cancer	21364760	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	21785460	CNVD
Sudden cardiac death	19188705	CNVD
Mantle cell lymphoma	19029149	CNVD
Malformation	19546859	CNVD
Schizophrenia	19546859	CNVD
Breast cancer	17133270	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
epilepsy	18472482	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Myxofibrosarcoma	16751306	CNVD
Parkinson disease	21907011	CNVD
Bladder cancer	21909424	CNVD
Glioblastoma multiforme	21138945	CNVD
Cancer	20164919	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:163904200-163912800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:163911000-163911600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:163912400-163912800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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