Variant report

Variant	nsv436512
Chromosome Location	chr6:75715638-75726015
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 419 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:419 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6918828	chr6:75715660-75715661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs535234896	chr6:75715662-75715663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs553686380	chr6:75715663-75715664	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs544323402	chr6:75715690-75715691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs111273686	chr6:75715707-75715708	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs112067474	chr6:75715720-75715721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs372989686	chr6:75715727-75715728	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs557645148	chr6:75715738-75715739	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs150144759	chr6:75715748-75715749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs543189479	chr6:75715759-75715760	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs185110649	chr6:75715790-75715791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs574836192	chr6:75715807-75715808	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs377176562	chr6:75715829-75715830	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs541962880	chr6:75715837-75715838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs369464838	chr6:75715898-75715899	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs560509874	chr6:75715905-75715906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs527702974	chr6:75715906-75715907	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs9447407	chr6:75715919-75715920	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs540917216	chr6:75715920-75715921	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs564750663	chr6:75715925-75715926	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs199906760	chr6:75715943-75715944	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs532092980	chr6:75715968-75715969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs550389612	chr6:75715972-75715973	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs190306650	chr6:75715979-75715980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs528934457	chr6:75715980-75715981	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs547194528	chr6:75715990-75715991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs565635930	chr6:75715992-75715993	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs150061014	chr6:75715993-75715994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs557358758	chr6:75716010-75716011	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs58731341	chr6:75716012-75716013	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs536959591	chr6:75716024-75716025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs555493210	chr6:75716031-75716032	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs373670275	chr6:75716040-75716041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs573776658	chr6:75716060-75716061	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs542275624	chr6:75716067-75716068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs74441032	chr6:75716070-75716071	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs553962148	chr6:75716108-75716109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs9443136	chr6:75716121-75716122	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs546217273	chr6:75716125-75716126	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs138338437	chr6:75716132-75716133	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs533673082	chr6:75716141-75716142	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs532000408	chr6:75716142-75716143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs543759901	chr6:75716144-75716145	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs113134240	chr6:75716150-75716151	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs529476314	chr6:75716173-75716174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs181792209	chr6:75716179-75716180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs565415668	chr6:75716199-75716200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs115894016	chr6:75716205-75716206	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs184724325	chr6:75716221-75716222	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs569313970	chr6:75716231-75716232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Ovarian cancer	17437010	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Multiple myeloma	16616336	CNVD
Acute myeloid leukemia	16864856	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Myelodysplastic syndrome	18508791	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75703000-75716200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:75707800-75721600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:75721400-75722000	Enhancers	Stomach Smooth Muscle	stomach
4	chr6:75721600-75721800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:75721600-75722000	Enhancers	Duodenum Smooth Muscle	Duodenum

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