Variant report

Variant	nsv436555
Chromosome Location	chr7:109564095-109568020
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:116 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs536506438	chr7:109565005-109565006	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs556479163	chr7:109565015-109565016	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs576024213	chr7:109565016-109565017	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs139411675	chr7:109565033-109565034	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs112339832	chr7:109565034-109565035	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs193203079	chr7:109565042-109565043	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs569830635	chr7:109565065-109565066	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs185480142	chr7:109565077-109565078	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs386716778	chr7:109565090-109565091	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs74548764	chr7:109565091-109565092	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs144806195	chr7:109565107-109565108	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs551850748	chr7:109565108-109565109	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs190783876	chr7:109565117-109565118	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs528125202	chr7:109565118-109565119	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs145799701	chr7:109565124-109565125	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs567510289	chr7:109565125-109565126	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs149008439	chr7:109565133-109565134	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs371079769	chr7:109565151-109565152	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs550039295	chr7:109565154-109565155	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs570049062	chr7:109565160-109565161	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs193117585	chr7:109565199-109565200	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs558654065	chr7:109565230-109565231	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs565455559	chr7:109565231-109565232	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs142955515	chr7:109565236-109565237	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs534770190	chr7:109565237-109565238	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs199768586	chr7:109565270-109565271	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs3114764	chr7:109565286-109565287	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs76837531	chr7:109565300-109565301	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs151048140	chr7:109565320-109565321	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs370292493	chr7:109565323-109565324	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs373694220	chr7:109565364-109565365	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs3114766	chr7:109565373-109565374	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs546079709	chr7:109565385-109565386	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs376993035	chr7:109565402-109565403	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs577669341	chr7:109565437-109565438	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs559045172	chr7:109565449-109565450	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs10487312	chr7:109565454-109565455	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs541520924	chr7:109565469-109565470	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs373544002	chr7:109565479-109565480	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs183675437	chr7:109565521-109565522	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs530217000	chr7:109565618-109565619	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs141214739	chr7:109565634-109565635	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs188288977	chr7:109565661-109565662	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs181110362	chr7:109565662-109565663	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs2396180	chr7:109565686-109565687	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
46	rs565928665	chr7:109565772-109565773	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs369855967	chr7:109565781-109565782	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs185852347	chr7:109565810-109565811	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs555081504	chr7:109565819-109565820	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs560327756	chr7:109565905-109565906	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21785460	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	17053054	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
Melanoma	17363583	CNVD
Myelofibrosis	22110671	CNVD
Squamous cell cancer	20885788	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	16397240	CNVD
Biliary cancer	19435499	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	23792589	CNVD
Adenocarcinoma	21044232	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Autism	19401682	CNVD
Non-small cell lung cancer	19889201	CNVD
Acute myeloid leukemia	18000384	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Metastatic melanoma	18483359	CNVD
Autism	18414403	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Melanoma	19188590	CNVD
small cell lung cancer	20016488	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:109565000-109566000	ZNF genes & repeats	Dnd41	blood
2	chr7:109565200-109566000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
3	chr7:109565200-109566200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:109566000-109567200	Weak transcription	Dnd41	blood

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