Variant report

Variant	nsv436559
Chromosome Location	chr7:56651427-56659740
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6952857	chr7:56651428-56651429	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs78288707	chr7:56651464-56651465	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs139504947	chr7:56651466-56651467	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs530068495	chr7:56651549-56651550	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs548623773	chr7:56651578-56651579	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs73354735	chr7:56651587-56651588	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs534268521	chr7:56651601-56651602	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs6955935	chr7:56651631-56651632	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs6957076	chr7:56651647-56651648	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs538094558	chr7:56651661-56651662	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs556772693	chr7:56651673-56651674	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs80264551	chr7:56651699-56651700	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs6957105	chr7:56651726-56651727	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs377538358	chr7:56651783-56651784	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs187408950	chr7:56651823-56651824	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs545881832	chr7:56651824-56651825	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs374968489	chr7:56651847-56651848	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs145016510	chr7:56651892-56651893	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs111392875	chr7:56651893-56651894	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs576147610	chr7:56651950-56651951	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs111486811	chr7:56651966-56651967	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs371344487	chr7:56651973-56651974	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs191081779	chr7:56652000-56652001	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs529218504	chr7:56652040-56652041	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs547747845	chr7:56652050-56652051	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs560484366	chr7:56652051-56652052	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs527731650	chr7:56652052-56652053	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs4285439	chr7:56652073-56652074	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs183651830	chr7:56652101-56652102	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs4442091	chr7:56652110-56652111	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs550126495	chr7:56652112-56652113	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs147551487	chr7:56652153-56652154	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs564968423	chr7:56652170-56652171	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs188054085	chr7:56652201-56652202	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs4464919	chr7:56652213-56652214	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
36	rs547758362	chr7:56652236-56652237	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs373795531	chr7:56652240-56652241	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs571700034	chr7:56652244-56652245	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs539071783	chr7:56652263-56652264	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs557788456	chr7:56652264-56652265	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs567567795	chr7:56652284-56652285	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs370627394	chr7:56652330-56652331	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs576077849	chr7:56652373-56652374	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Wilms tumour	21544195	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Biliary cancer	19435499	CNVD
Cancer	21183584	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
Esophageal cancer	21851588	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Intracranial ependymoma	16609018	CNVD
Lung cancer	21911935	CNVD
Urothelial cell carcinoma	18451213	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	19455253	CNVD
Lung cancer	17925434	CNVD
Glioma	24330732	CNVD
Lung adenocarcinoma	23938291	CNVD
Glioma	17634744	CNVD
Oral squamous cell carcinoma	19276369	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Lung cancer	20031968	CNVD
Glioblastoma	17090523	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Glioma	17123091	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Medullary thyroid carcinoma	18765511	CNVD
small cell lung cancer	20016488	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:56651200-56652400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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