Variant report

Variant	nsv437442
Chromosome Location	chr4:151844930-151884313
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:27)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:151877350..151879470-chr4:151882177..151883692,2	K562	blood:
2	chr4:151853140..151855693-chr4:151862227..151864085,2	MCF-7	breast:
3	chr4:151840995..151842653-chr4:151848831..151850409,2	MCF-7	breast:
4	chr4:151881996..151883643-chr4:151936470..151938067,2	MCF-7	breast:
5	chr4:151865757..151867781-chr4:151869547..151872879,3	K562	blood:
6	chr4:151866579..151869157-chr4:152019961..152022233,2	K562	blood:
7	chr4:151863391..151864945-chr4:151935370..151936984,2	K562	blood:
8	chr4:151858340..151860343-chr4:151871989..151873498,2	K562	blood:
9	chr4:151856044..151857786-chr4:151866410..151868032,2	MCF-7	breast:
10	chr4:151881135..151883794-chr4:151886997..151888968,2	MCF-7	breast:
11	chr4:151858185..151860880-chr4:151862516..151865242,2	K562	blood:
12	chr1:174358031..174358668-chr4:151874262..151874762,2	MCF-7	breast:
13	chr4:151863391..151865111-chr4:151934001..151936984,2	K562	blood:
14	chr4:151856044..151857786-chr4:151866410..151868032,2	MCF-7	breast:
15	chr4:151865757..151867781-chr4:151869547..151872879,3	K562	blood:
16	chr4:151858340..151860343-chr4:151871989..151873498,2	K562	blood:
17	chr4:151845043..151847857-chr4:151848040..151850995,2	MCF-7	breast:
18	chr4:151870335..151873445-chr4:152019879..152022004,3	K562	blood:
19	chr4:151855396..151857375-chr4:151872035..151874195,2	K562	blood:
20	chr4:151855396..151857375-chr4:151872035..151874195,2	K562	blood:
21	chr4:151845043..151847857-chr4:151848040..151850995,2	MCF-7	breast:
22	chr4:151858185..151860880-chr4:151862516..151865242,2	K562	blood:
23	chr4:151840792..151843741-chr4:151844272..151846980,2	MCF-7	breast:
24	chr4:151847139..151848765-chr4:152022456..152024763,2	K562	blood:
25	chr4:151853140..151855693-chr4:151862227..151864085,2	MCF-7	breast:
26	chr4:151872979..151875947-chr4:151936623..151938393,3	MCF-7	breast:
27	chr4:151877350..151879470-chr4:151882177..151883692,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000198589	chromatin interactions
ENSG00000201264	chromatin interactions
ENSG00000145425	chromatin interactions

Extended variants
information (count: 1364 )
Associated
traits (count: 76 )

Variant overlapped rSNPs/rCNVs (count:1364 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1212118	chr4:151844930-151844931	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs553972507	chr4:151844963-151844964	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs574021401	chr4:151844986-151844987	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs148882525	chr4:151844998-151844999	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs556474246	chr4:151845007-151845008	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs570349067	chr4:151845011-151845012	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs575953505	chr4:151845099-151845100	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs72963615	chr4:151845105-151845106	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs369505230	chr4:151845108-151845109	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs182248131	chr4:151845140-151845141	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs1211139	chr4:151845201-151845202	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs76796427	chr4:151845249-151845250	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs398108129	chr4:151845251-151845252	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs398064137	chr4:151845252-151845253	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs376111721	chr4:151845336-151845337	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs541166148	chr4:151845391-151845392	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs560831531	chr4:151845433-151845434	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs529750402	chr4:151845438-151845439	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs187213058	chr4:151845447-151845448	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs190051686	chr4:151845497-151845498	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs532078264	chr4:151845539-151845540	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs552081032	chr4:151845600-151845601	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs6855640	chr4:151845612-151845613	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs534123540	chr4:151845613-151845614	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs554300854	chr4:151845614-151845615	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs113617149	chr4:151845625-151845626	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs536722263	chr4:151845627-151845628	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs34634354	chr4:151845635-151845636	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs143586330	chr4:151845641-151845642	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs372325150	chr4:151845698-151845699	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs35897674	chr4:151845707-151845708	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs541721658	chr4:151845719-151845720	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs181717539	chr4:151845747-151845748	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs369817329	chr4:151845753-151845754	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs577487034	chr4:151845785-151845786	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs544746697	chr4:151845887-151845888	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs562985438	chr4:151845919-151845920	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs148056547	chr4:151845955-151845956	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs373119236	chr4:151845965-151845966	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs540874321	chr4:151845988-151845989	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs561111177	chr4:151845998-151845999	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs113261577	chr4:151846078-151846079	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs112637021	chr4:151846093-151846094	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs186257475	chr4:151846097-151846098	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs543491914	chr4:151846156-151846157	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs190186714	chr4:151846195-151846196	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs563300865	chr4:151846198-151846199	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs143763113	chr4:151846261-151846262	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs545896348	chr4:151846299-151846300	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs201496227	chr4:151846317-151846318	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:76)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	16272173	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Esophageal cancer	21851588	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Olfactory neuroblastoma	18408657	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21633010	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Non-small cell lung cancer	21829676	CNVD
Breast cancer	17588203	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Breast cancer	22522925	CNVD
Cancer	20164919	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:609 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151796000-151845000	Weak transcription	Fetal Heart	heart
2	chr4:151796000-151846000	Weak transcription	Aorta	Aorta
3	chr4:151796000-151847200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:151796200-151849600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:151796200-151872000	Weak transcription	Psoas Muscle	Psoas
6	chr4:151796400-151855000	Weak transcription	Gastric	stomach
7	chr4:151796400-151886600	Weak transcription	Pancreas	Pancrea
8	chr4:151796800-151851000	Weak transcription	Lung	lung
9	chr4:151806800-151851600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:151806800-151860400	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:151811800-151852800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr4:151812000-151857800	Weak transcription	NH-A	brain
13	chr4:151813600-151847000	Weak transcription	Brain Angular Gyrus	brain
14	chr4:151821400-151850800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr4:151824800-151845400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:151824800-151851200	Weak transcription	Esophagus	oesophagus
17	chr4:151825200-151850800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr4:151828200-151847000	Weak transcription	Brain Hippocampus Middle	brain
19	chr4:151828600-151850600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr4:151828800-151850400	Weak transcription	Colonic Mucosa	Colon
21	chr4:151832800-151848000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr4:151833000-151847800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:151833600-151846000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr4:151833600-151847000	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr4:151833600-151847400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr4:151833600-151850600	Weak transcription	Fetal Muscle Leg	muscle
27	chr4:151834000-151845400	Weak transcription	Fetal Intestine Small	intestine
28	chr4:151834000-151849200	Weak transcription	Fetal Lung	lung
29	chr4:151834000-151851200	Weak transcription	Ovary	ovary
30	chr4:151834600-151846000	Weak transcription	Thymus	Thymus
31	chr4:151834600-151850200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr4:151834600-151850600	Weak transcription	Fetal Stomach	stomach
33	chr4:151834600-151854800	Weak transcription	Left Ventricle	heart
34	chr4:151835400-151851000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr4:151835600-151846600	Weak transcription	Dnd41	blood
36	chr4:151835800-151848000	Weak transcription	Small Intestine	intestine
37	chr4:151835800-151859000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr4:151836000-151845400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr4:151836000-151855000	Weak transcription	HSMM	muscle
40	chr4:151836000-151863400	Weak transcription	NHEK	skin
41	chr4:151836000-151865000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr4:151836200-151858000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr4:151836200-151859800	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr4:151836400-151850800	Weak transcription	Placenta	Placenta
45	chr4:151836400-151859600	Weak transcription	HMEC	breast
46	chr4:151836600-151855000	Weak transcription	Brain Anterior Caudate	brain
47	chr4:151836600-151860200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr4:151836800-151845400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr4:151837000-151845600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr4:151837000-151859400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links