Variant report

Variant	nsv437666
Chromosome Location	chr10:42356543-42397929
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:42385424..42387506-chr16:88876940..88878642,2	MCF-7	breast:
2	chr10:42385049..42385862-chr2:89835873..89836374,2	MCF-7	breast:
3	chr1:149222942..149224601-chr10:42397745..42399854,2	MCF-7	breast:
4	chr10:42384702..42385548-chr19:46850298..46850828,2	MCF-7	breast:
5	chr10:42385048..42385927-chr20:45917973..45918793,2	MCF-7	breast:
6	chr1:115646794..115647295-chr10:42392648..42393148,2	MCF-7	breast:
7	chr10:42387191..42387693-chr16:34189725..34190226,2	MCF-7	breast:
8	chr10:42396677..42397179-chr2:92268827..92269338,2	MCF-7	breast:
9	chr10:42396404..42399699-chr10:42528302..42530349,4	MCF-7	breast:
10	chr10:42385202..42385933-chr7:149119111..149120081,2	MCF-7	breast:
11	chr10:42387171..42387692-chr16:33888891..33889406,2	MCF-7	breast:
12	chr10:42397869..42400416-chr19:27731046..27733513,2	MCF-7	breast:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMS1-12	chr10:42383750-42383799	NONHSAT012847
2	lnc-BMS1-12	chr10:42391195-42391205	NONHSAT012847
3	lnc-BMS1-12	chr10:42389851-42389943	NONHSAT012847
4	lnc-BMS1-12	chr10:42387203-42387475	NONHSAT012847
5	lnc-BMS1-12	chr10:42397884-42397971	NONHSAT012847
6	lnc-BMS1-11	chr10:42385001-42385282	NONHSAT012848

No data

Variant related genes	Relation type
ENSG00000206737	chromatin interactions
ENSG00000198931	chromatin interactions
ENSG00000261842	chromatin interactions
ENSG00000011485	chromatin interactions

Extended variants
information (count: 10972 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:10972 , 50 per page) page: 1 2 3 4 5 6 7 ... 220

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9663161	chr10:42356543-42356544	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs76953602	chr10:42356544-42356545	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs61829049	chr10:42356556-42356557	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs79916362	chr10:42356558-42356559	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs62641318	chr10:42356560-42356561	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs62294211	chr10:42356562-42356563	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs575417151	chr10:42356573-42356574	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs63749120	chr10:42356574-42356575	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs544294145	chr10:42356575-42356576	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs138646160	chr10:42356580-42356581	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs77342642	chr10:42356581-42356582	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs77745174	chr10:42356585-42356586	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs368715660	chr10:42356590-42356591	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs61829051	chr10:42356592-42356593	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs563772072	chr10:42356595-42356596	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs79436749	chr10:42356598-42356599	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs532725469	chr10:42356603-42356604	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs61829052	chr10:42356606-42356607	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs79473234	chr10:42356609-42356610	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs74442122	chr10:42356610-42356611	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs546209771	chr10:42356611-42356612	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs61829053	chr10:42356618-42356619	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs200376356	chr10:42356619-42356620	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs370160985	chr10:42356620-42356621	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs150071681	chr10:42356623-42356624	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs61829054	chr10:42356624-42356625	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs373019536	chr10:42356631-42356632	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs377096873	chr10:42356632-42356633	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs4571302	chr10:42356634-42356635	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs61829056	chr10:42356635-42356636	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs75587019	chr10:42356652-42356653	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs75591282	chr10:42356653-42356654	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs76433014	chr10:42356654-42356655	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs79648838	chr10:42356658-42356659	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs74847488	chr10:42356660-42356661	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs74565419	chr10:42356668-42356669	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs369719203	chr10:42356670-42356671	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs371833780	chr10:42356671-42356672	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs373752168	chr10:42356674-42356675	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs377590557	chr10:42356675-42356676	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs77420763	chr10:42356678-42356679	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs74721439	chr10:42356681-42356682	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs79335060	chr10:42356686-42356687	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs74917260	chr10:42356690-42356691	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs78652107	chr10:42356695-42356696	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs28821852	chr10:42356698-42356699	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs12220604	chr10:42356700-42356701	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs28796090	chr10:42356710-42356711	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs370156069	chr10:42356725-42356726	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs374388865	chr10:42356738-42356739	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Breast cancer	22522925	CNVD
Ovarian cancer	21781307	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:758 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42354800-42366400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:42354800-42367200	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr10:42354800-42367200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
4	chr10:42354800-42367200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
5	chr10:42354800-42367400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr10:42354800-42367400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr10:42354800-42367400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr10:42354800-42367400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr10:42354800-42368000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:42354800-42368000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
11	chr10:42355000-42356800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
12	chr10:42355000-42357800	ZNF genes & repeats	Gastric	stomach
13	chr10:42355000-42358800	ZNF genes & repeats	Fetal Brain Female	brain
14	chr10:42355000-42359200	ZNF genes & repeats	Brain Germinal Matrix	brain
15	chr10:42355000-42360400	ZNF genes & repeats	NHLF	lung
16	chr10:42355000-42362800	ZNF genes & repeats	Psoas Muscle	Psoas
17	chr10:42355000-42365400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
18	chr10:42355000-42365400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:42355000-42365400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
20	chr10:42355000-42365600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
21	chr10:42355000-42365600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
22	chr10:42355000-42365600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:42355000-42365600	ZNF genes & repeats	Primary B cells from cord blood	blood
24	chr10:42355000-42365600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
25	chr10:42355000-42365600	ZNF genes & repeats	Aorta	Aorta
26	chr10:42355000-42365600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
27	chr10:42355000-42365600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
28	chr10:42355000-42365600	ZNF genes & repeats	Stomach Mucosa	stomach
29	chr10:42355000-42365600	ZNF genes & repeats	GM12878-XiMat	blood
30	chr10:42355000-42365600	ZNF genes & repeats	HepG2	liver
31	chr10:42355000-42365600	ZNF genes & repeats	HSMMtube	muscle
32	chr10:42355000-42365600	ZNF genes & repeats	HUVEC	blood vessel
33	chr10:42355000-42365800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
34	chr10:42355000-42365800	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
35	chr10:42355000-42365800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:42355000-42365800	ZNF genes & repeats	Fetal Heart	heart
37	chr10:42355000-42365800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
38	chr10:42355000-42365800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
39	chr10:42355000-42365800	ZNF genes & repeats	K562	blood
40	chr10:42355000-42365800	ZNF genes & repeats	NH-A	brain
41	chr10:42355000-42366000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr10:42355000-42366000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:42355000-42366000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:42355000-42366000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
45	chr10:42355000-42366000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
46	chr10:42355000-42366000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
47	chr10:42355000-42366000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
48	chr10:42355000-42366000	ZNF genes & repeats	Brain Angular Gyrus	brain
49	chr10:42355000-42366000	ZNF genes & repeats	Brain Cingulate Gyrus	brain
50	chr10:42355000-42366000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain

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