Variant report

Variant	nsv437667
Chromosome Location	chr10:42357770-42397929
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:42387191..42387693-chr16:34189725..34190226,2	MCF-7	breast:
2	chr10:42397869..42400416-chr19:27731046..27733513,2	MCF-7	breast:
3	chr10:42385049..42385862-chr2:89835873..89836374,2	MCF-7	breast:
4	chr10:42396677..42397179-chr2:92268827..92269338,2	MCF-7	breast:
5	chr1:149222942..149224601-chr10:42397745..42399854,2	MCF-7	breast:
6	chr1:115646794..115647295-chr10:42392648..42393148,2	MCF-7	breast:
7	chr10:42387171..42387692-chr16:33888891..33889406,2	MCF-7	breast:
8	chr10:42385048..42385927-chr20:45917973..45918793,2	MCF-7	breast:
9	chr10:42385202..42385933-chr7:149119111..149120081,2	MCF-7	breast:
10	chr10:42385424..42387506-chr16:88876940..88878642,2	MCF-7	breast:
11	chr10:42384702..42385548-chr19:46850298..46850828,2	MCF-7	breast:
12	chr10:42396404..42399699-chr10:42528302..42530349,4	MCF-7	breast:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMS1-12	chr10:42391195-42391205	NONHSAT012847
2	lnc-BMS1-12	chr10:42389851-42389943	NONHSAT012847
3	lnc-BMS1-12	chr10:42387203-42387475	NONHSAT012847
4	lnc-BMS1-11	chr10:42385001-42385282	NONHSAT012848
5	lnc-BMS1-12	chr10:42397884-42397971	NONHSAT012847
6	lnc-BMS1-12	chr10:42383750-42383799	NONHSAT012847

No data

Variant related genes	Relation type
ENSG00000206737	chromatin interactions
ENSG00000198931	chromatin interactions
ENSG00000011485	chromatin interactions
ENSG00000261842	chromatin interactions

Extended variants
information (count: 10738 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:10738 , 50 per page) page: 1 2 3 4 5 6 7 ... 215

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12219936	chr10:42357770-42357771	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs28971564	chr10:42357783-42357784	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs11266105	chr10:42357789-42357790	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs374873396	chr10:42357792-42357793	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs369328101	chr10:42357813-42357814	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
6	rs200658398	chr10:42357816-42357817	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
7	rs369362023	chr10:42357817-42357818	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
8	rs11266110	chr10:42357822-42357823	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
9	rs201767529	chr10:42357826-42357827	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
10	rs376490608	chr10:42357836-42357837	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
11	rs370471451	chr10:42357846-42357847	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
12	rs370648814	chr10:42357849-42357850	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
13	rs1909345	chr10:42357853-42357854	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
14	rs546779214	chr10:42357854-42357855	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
15	rs1909344	chr10:42357855-42357856	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
16	rs374352463	chr10:42357858-42357859	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
17	rs11266111	chr10:42357860-42357861	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
18	rs367921209	chr10:42357861-42357862	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
19	rs370065137	chr10:42357865-42357866	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
20	rs111208811	chr10:42357873-42357874	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
21	rs28971857	chr10:42357880-42357881	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
22	rs373310756	chr10:42357882-42357883	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
23	rs11266112	chr10:42357887-42357888	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
24	rs75873819	chr10:42357892-42357893	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
25	rs370785754	chr10:42357894-42357895	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
26	rs374105793	chr10:42357895-42357896	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
27	rs78360809	chr10:42357896-42357897	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
28	rs1909343	chr10:42357898-42357899	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
29	rs377505133	chr10:42357901-42357902	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
30	rs535790222	chr10:42357905-42357906	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
31	rs369510242	chr10:42357909-42357910	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
32	rs374192277	chr10:42357916-42357917	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
33	rs367694668	chr10:42357918-42357919	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
34	rs151032567	chr10:42357925-42357926	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
35	rs200057390	chr10:42357926-42357927	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
36	rs377533520	chr10:42357931-42357932	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
37	rs370752719	chr10:42357936-42357937	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
38	rs201294441	chr10:42357939-42357940	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
39	rs200883118	chr10:42357942-42357943	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
40	rs374847882	chr10:42357947-42357948	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
41	rs200227154	chr10:42357952-42357953	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
42	rs201396742	chr10:42357957-42357958	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
43	rs11266115	chr10:42357959-42357960	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
44	rs374480010	chr10:42357966-42357967	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
45	rs11266116	chr10:42357968-42357969	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
46	rs62641325	chr10:42357973-42357974	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
47	rs28972592	chr10:42357974-42357975	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
48	rs368877289	chr10:42357979-42357980	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
49	rs371873661	chr10:42357980-42357981	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
50	rs80003426	chr10:42357982-42357983	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Breast cancer	22522925	CNVD
Ovarian cancer	21781307	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:753 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42354800-42366400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:42354800-42367200	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr10:42354800-42367200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
4	chr10:42354800-42367200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
5	chr10:42354800-42367400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr10:42354800-42367400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr10:42354800-42367400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr10:42354800-42367400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr10:42354800-42368000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:42354800-42368000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
11	chr10:42355000-42357800	ZNF genes & repeats	Gastric	stomach
12	chr10:42355000-42358800	ZNF genes & repeats	Fetal Brain Female	brain
13	chr10:42355000-42359200	ZNF genes & repeats	Brain Germinal Matrix	brain
14	chr10:42355000-42360400	ZNF genes & repeats	NHLF	lung
15	chr10:42355000-42362800	ZNF genes & repeats	Psoas Muscle	Psoas
16	chr10:42355000-42365400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
17	chr10:42355000-42365400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr10:42355000-42365400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
19	chr10:42355000-42365600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
20	chr10:42355000-42365600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
21	chr10:42355000-42365600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:42355000-42365600	ZNF genes & repeats	Primary B cells from cord blood	blood
23	chr10:42355000-42365600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
24	chr10:42355000-42365600	ZNF genes & repeats	Aorta	Aorta
25	chr10:42355000-42365600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
26	chr10:42355000-42365600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
27	chr10:42355000-42365600	ZNF genes & repeats	Stomach Mucosa	stomach
28	chr10:42355000-42365600	ZNF genes & repeats	GM12878-XiMat	blood
29	chr10:42355000-42365600	ZNF genes & repeats	HepG2	liver
30	chr10:42355000-42365600	ZNF genes & repeats	HSMMtube	muscle
31	chr10:42355000-42365600	ZNF genes & repeats	HUVEC	blood vessel
32	chr10:42355000-42365800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
33	chr10:42355000-42365800	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
34	chr10:42355000-42365800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:42355000-42365800	ZNF genes & repeats	Fetal Heart	heart
36	chr10:42355000-42365800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
37	chr10:42355000-42365800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
38	chr10:42355000-42365800	ZNF genes & repeats	K562	blood
39	chr10:42355000-42365800	ZNF genes & repeats	NH-A	brain
40	chr10:42355000-42366000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:42355000-42366000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:42355000-42366000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:42355000-42366000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
44	chr10:42355000-42366000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
45	chr10:42355000-42366000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
46	chr10:42355000-42366000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
47	chr10:42355000-42366000	ZNF genes & repeats	Brain Angular Gyrus	brain
48	chr10:42355000-42366000	ZNF genes & repeats	Brain Cingulate Gyrus	brain
49	chr10:42355000-42366000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
50	chr10:42355000-42366000	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links