Variant report

Variant	nsv437669
Chromosome Location	chr10:42523670-42608040
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:60)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:60 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr10:42532112..42532613-chr19:27734969..27735848,2	MCF-7	breast:
2	chr10:42529282..42529919-chr2:134391577..134392424,2	MCF-7	breast:
3	chr10:42526394..42527915-chr7:61967791..61969362,3	MCF-7	breast:
4	chr1:121484509..121485410-chr10:42528540..42529041,2	MCF-7	breast:
5	chr10:42528302..42530981-chr19:27731210..27733512,2	MCF-7	breast:
6	chr10:42528106..42531063-chr19:27736683..27739174,2	K562	blood:
7	chr10:42530126..42531081-chr19:27738662..27739344,3	MCF-7	breast:
8	chr10:42527395..42527923-chr7:61968860..61969524,4	MCF-7	breast:
9	chr1:121482910..121485426-chr10:42527270..42532610,10	MCF-7	breast:
10	chr1:121483933..121485433-chr10:42530465..42531081,9	MCF-7	breast:
11	chr1:121484906..121485408-chr10:42529869..42530392,2	MCF-7	breast:
12	chr10:42529415..42529944-chr19:27739260..27739782,2	MCF-7	breast:
13	chr10:42530145..42531061-chr19:27738673..27739367,3	MCF-7	breast:
14	chr10:42530231..42530737-chr16:29006682..29007182,2	MCF-7	breast:
15	chr10:42529603..42530301-chr17:58166691..58167257,2	MCF-7	breast:
16	chr10:42529421..42530247-chr2:12411785..12412750,2	MCF-7	breast:
17	chr1:121482909..121485419-chr10:42527541..42532488,18	MCF-7	breast:
18	chr10:42528075..42531081-chr19:27735905..27739791,6	MCF-7	breast:
19	chr10:42531904..42532590-chr13:98148609..98149589,2	MCF-7	breast:
20	chr10:42530906..42532591-chr12:125398363..125400597,2	MCF-7	breast:
21	chr1:121484711..121485401-chr10:42532112..42532774,3	MCF-7	breast:
22	chr1:121484917..121485418-chr10:42529872..42530372,2	MCF-7	breast:
23	chr10:42525601..42527915-chr7:61967079..61969278,2	K562	blood:
24	chr10:42528102..42529921-chr12:34831375..34832895,2	K562	blood:
25	chr10:10531872..10532392-chr10:42529084..42529944,2	MCF-7	breast:
26	chr10:42527520..42529802-chr19:27732626..27735592,2	K562	blood:
27	chr10:42529561..42531107-chr15:41406107..41408391,2	MCF-7	breast:
28	chr10:42526395..42527915-chr7:61967791..61969507,5	MCF-7	breast:
29	chr10:42527395..42527915-chr7:61970565..61971091,3	MCF-7	breast:
30	chr10:42528736..42531443-chr2:73087371..73089045,2	MCF-7	breast:
31	chr10:42531427..42532425-chr11:19922614..19923134,2	MCF-7	breast:
32	chr10:42529302..42529920-chr19:27734982..27735519,2	MCF-7	breast:
33	chr10:42532093..42532747-chr2:154892410..154892910,2	MCF-7	breast:
34	chr10:42398850..42399800-chr10:42529302..42530219,2	MCF-7	breast:
35	chr10:42398850..42399487-chr10:42529302..42530228,2	MCF-7	breast:
36	chr1:121484705..121485362-chr10:42530459..42531081,4	MCF-7	breast:
37	chr10:42399009..42399706-chr10:42529715..42530239,2	MCF-7	breast:
38	chr1:121484702..121485223-chr10:42530561..42531081,2	MCF-7	breast:
39	chr10:42528107..42529933-chr8:110778066..110779566,2	MCF-7	breast:
40	chr10:42527415..42527915-chr7:61968777..61969450,2	MCF-7	breast:
41	chr1:121484862..121485397-chr10:42530581..42531081,2	MCF-7	breast:
42	chr1:121484248..121485086-chr10:42528519..42529041,2	MCF-7	breast:
43	chr10:42528281..42529803-chr7:129794745..129796264,2	MCF-7	breast:
44	chr10:42528436..42531081-chr19:27736662..27739367,4	MCF-7	breast:
45	chr1:121484520..121485419-chr10:42530561..42531081,2	K562	blood:
46	chr10:42529082..42529941-chr19:27738664..27739193,3	MCF-7	breast:
47	chr1:121483719..121484637-chr10:42529281..42529801,2	MCF-7	breast:
48	chr10:42529442..42530392-chr19:27737662..27738480,2	MCF-7	breast:
49	chr10:42527395..42527914-chr7:61968778..61969295,2	MCF-7	breast:
50	chr1:121482838..121485428-chr10:42529461..42532722,10	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMS1-10	chr10:42529998-42530057	NONHSAT012852
2	lnc-CCNYL2-9	chr10:42596697-42596905	NONHSAT012853
3	lnc-BMS1-10	chr10:42529283-42529832	FPKM1_group_3228_transcript_1
4	lnc-CCNYL2-9	chr10:42598751-42598801	NONHSAT012853
5	lnc-BMS1-10	chr10:42529283-42529832	NONHSAT012852
6	lnc-BMS1-10	chr10:42529998-42530003	FPKM1_group_3228_transcript_1

No data

Variant related genes	Relation type
ENSG00000143786	chromatin interactions
ENSG00000265345	chromatin interactions
ENSG00000150991	chromatin interactions
ENSG00000128908	chromatin interactions
ENSG00000162923	chromatin interactions

Extended variants
information (count: 7178 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:7178 , 50 per page) page: 1 2 3 4 5 6 7 ... 144

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9703868	chr10:42523670-42523671	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs189601887	chr10:42523672-42523673	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs80048950	chr10:42523698-42523699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs77903766	chr10:42523706-42523707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs556981192	chr10:42523721-42523722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs576873169	chr10:42523724-42523725	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs545837848	chr10:42523748-42523749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs536052923	chr10:42523750-42523751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs80241791	chr10:42523752-42523753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs545176667	chr10:42523798-42523799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs112423891	chr10:42523827-42523828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs376883248	chr10:42523839-42523840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs181208377	chr10:42523849-42523850	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs111448153	chr10:42523853-42523854	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs530185853	chr10:42523862-42523863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs549894563	chr10:42523880-42523881	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs113645831	chr10:42523894-42523895	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs150623677	chr10:42523898-42523899	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs75179276	chr10:42523915-42523916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs560836076	chr10:42523940-42523941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs565924300	chr10:42523946-42523947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs373671963	chr10:42523957-42523958	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs140805700	chr10:42523960-42523961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs532675715	chr10:42523969-42523970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs144768702	chr10:42523976-42523977	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs577992588	chr10:42523977-42523978	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs557066949	chr10:42523982-42523983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs185896263	chr10:42523994-42523995	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs539401305	chr10:42523995-42523996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs552735445	chr10:42524013-42524014	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs189022834	chr10:42524020-42524021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs201870184	chr10:42524035-42524036	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs541391297	chr10:42524086-42524087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs555127633	chr10:42524087-42524088	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs181620213	chr10:42524089-42524090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs543629686	chr10:42524109-42524110	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs563393719	chr10:42524123-42524124	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs199884449	chr10:42524135-42524136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs186287564	chr10:42524142-42524143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs147483445	chr10:42524148-42524149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs574134122	chr10:42524156-42524157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs12260055	chr10:42524166-42524167	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs192029151	chr10:42524203-42524204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs568365831	chr10:42524212-42524213	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs71405237	chr10:42524218-42524219	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs182665732	chr10:42524224-42524225	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs550805417	chr10:42524226-42524227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs185886829	chr10:42524231-42524232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs71603527	chr10:42524240-42524241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs539590124	chr10:42524269-42524270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Pancreatic cancer	17952125	CNVD
Autism	20531469	CNVD

Chromatin state (count:1280 , 50 per page) page: 1 2 3 4 5 6 7 ... 26

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42520800-42525800	Weak transcription	Right Atrium	heart
2	chr10:42523200-42525800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr10:42525400-42526200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr10:42525400-42533200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr10:42525600-42526200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:42525600-42526200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:42525600-42526200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
8	chr10:42525600-42526200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
9	chr10:42525600-42526200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:42525600-42526200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:42525600-42526200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
12	chr10:42525600-42526200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:42525600-42526200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:42525600-42526200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
15	chr10:42525600-42526200	ZNF genes & repeats	Fetal Brain Male	brain
16	chr10:42525600-42526200	ZNF genes & repeats	Fetal Lung	lung
17	chr10:42525600-42526200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
18	chr10:42525600-42526200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
19	chr10:42525600-42526200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
20	chr10:42525800-42526000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:42525800-42526000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:42525800-42526000	Active TSS	NHLF	lung
23	chr10:42525800-42526200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
24	chr10:42525800-42526200	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
25	chr10:42525800-42526200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:42525800-42526200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
27	chr10:42525800-42526200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr10:42525800-42526200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
29	chr10:42525800-42526200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:42525800-42526200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:42525800-42526200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
32	chr10:42525800-42526200	ZNF genes & repeats	Primary T cells from cord blood	blood
33	chr10:42525800-42526200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:42525800-42526200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
35	chr10:42525800-42526200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
36	chr10:42525800-42526200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
37	chr10:42525800-42526200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
38	chr10:42525800-42526200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
39	chr10:42525800-42526200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
40	chr10:42525800-42526200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr10:42525800-42526200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
42	chr10:42525800-42526200	Active TSS	Aorta	Aorta
43	chr10:42525800-42526200	ZNF genes & repeats	Liver	Liver
44	chr10:42525800-42526200	ZNF genes & repeats	Brain Angular Gyrus	brain
45	chr10:42525800-42526200	ZNF genes & repeats	Brain Anterior Caudate	brain
46	chr10:42525800-42526200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
47	chr10:42525800-42526200	ZNF genes & repeats	Brain Hippocampus Middle	brain
48	chr10:42525800-42526200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
49	chr10:42525800-42526200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
50	chr10:42525800-42526200	ZNF genes & repeats	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links