Variant report

Variant	nsv437721
Chromosome Location	chr11:108919802-108922505
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 92 )

Variant overlapped rSNPs/rCNVs (count:106 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11212884	chr11:108919802-108919803	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs368001247	chr11:108919812-108919813	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs539287008	chr11:108919830-108919831	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs552832486	chr11:108919841-108919842	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs559425162	chr11:108919857-108919858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs192040688	chr11:108919859-108919860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs182752620	chr11:108919960-108919961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs548989456	chr11:108919970-108919971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs187730430	chr11:108919985-108919986	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs572828522	chr11:108920001-108920002	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs72996779	chr11:108920021-108920022	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs11212885	chr11:108920023-108920024	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs374197721	chr11:108920025-108920026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs11212886	chr11:108920045-108920046	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs76540294	chr11:108920057-108920058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs572417755	chr11:108920059-108920060	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs190085278	chr11:108920061-108920062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs536923393	chr11:108920062-108920063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs182366562	chr11:108920116-108920117	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs187037782	chr11:108920136-108920137	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs537041258	chr11:108920196-108920197	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs11212887	chr11:108920247-108920248	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs561399586	chr11:108920288-108920289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs191944319	chr11:108920290-108920291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs146497714	chr11:108920352-108920353	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs553106511	chr11:108920356-108920357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs185254305	chr11:108920380-108920381	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs375481235	chr11:108920389-108920390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs10502108	chr11:108920481-108920482	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs560947577	chr11:108920486-108920487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs59091439	chr11:108920528-108920529	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs543401327	chr11:108920548-108920549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs565267870	chr11:108920554-108920555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs532847016	chr11:108920556-108920557	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs11212888	chr11:108920581-108920582	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs118084096	chr11:108920616-108920617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs547694886	chr11:108920707-108920708	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs566229826	chr11:108920739-108920740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs530420995	chr11:108920740-108920741	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs9971513	chr11:108920786-108920787	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs188963763	chr11:108920816-108920817	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs537079775	chr11:108920833-108920834	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs558505223	chr11:108920876-108920877	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs11212889	chr11:108920882-108920883	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs570477831	chr11:108920887-108920888	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs193133697	chr11:108920900-108920901	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs12283043	chr11:108920902-108920903	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs138761475	chr11:108920971-108920972	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs11212890	chr11:108920983-108920984	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs556874723	chr11:108920998-108920999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:92)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Ovarian cancer	21720365	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Neuroblastoma	17327916	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mantle cell lymphoma	19029149	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant melanoma	17260012	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	18632612	CNVD
Renal cell carcinoma	21668985	CNVD
Cancer	20164920	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Developmental delay	21147756	CNVD
Breast cancer	21509527	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108915600-108922000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:108922000-108922200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr11:108922000-108922200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:108922400-108922600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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